PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2086
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 307aa    MW: 33406.1 Da    PI: 7.916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2086genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-20133182255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  Gh_D02G2086 133 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEEAARAYDKAAIDFRG 182
                  59*******.**********82....48**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.71E-34132190No hitNo description
Gene3DG3DSA:3.30.730.101.2E-32133190IPR001471AP2/ERF domain
PROSITE profilePS5103225.211133190IPR001471AP2/ERF domain
PfamPF008473.4E-14133182IPR001471AP2/ERF domain
SMARTSM003802.6E-38133196IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23133192IPR016177DNA-binding domain
PRINTSPR003674.5E-12134145IPR001471AP2/ERF domain
PRINTSPR003674.5E-12156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MLRQRKRYRF TVISPSLTFP PSPIRRLSAE QENSVIVSAL KNVITASVPS SSSSSTVDVA  60
ADFGLNFGTL TMAGGSSSSS SASLVLQPSE VMEKCHVCEF DGCLGCNLFP PSQQEDKNGA  120
TASNKTTKRV KKNYRGVRQR PWGKWAAEIR DPRRAARVWL GTFNTAEEAA RAYDKAAIDF  180
RGPRAKLNFP FQVAAEIDND NVITPAPPPS AAASSTPTNT TTMTTTIVSS DQEINSGSLN  240
ALQQESDQQK NASFEMGLGT EFWDGISNDD EIQQWMMMTG FGANNNNNSS DSAMTSTRNA  300
NSPRYQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24132193163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.100830.0ovule| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691689.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
RefseqXP_016691690.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ066e-34EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1U8JN410.0A0A1U8JN41_GOSHI; ethylene-responsive transcription factor ERF109-like
STRINGGorai.005G238000.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.13e-30redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]