PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2021
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 272aa    MW: 29961.3 Da    PI: 4.5991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2021genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-101962361055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Gh_D02G2021 196 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 236
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14187252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12191245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-12195240No hitNo description
PfamPF000107.5E-8196236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDSMGTLLEG DWSCFSGMYT TEQEADFMAQ LLSNCPQLPD IDMSNYLSDS NPVFVTNNSP  60
ISMDFCMEDG TNTSFFLVEP DDCLNPEMGK DGNVEKEPKP EPEKKSSNKR SRNSGDVHVQ  120
KTKRNGRSKK NQTIAANDDE DGNGGLNGQS WASCSSEDDS NGGANSGSKG EATLNLNGKT  180
RASRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD ISTMLEEAVQ YVKFLQLQIK  240
LLSSDDLWMY APIAYNGMDI GIDLKVGTAK RT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5838431e-100JX583843.1 Gossypium hirsutum clone NBRI_GE16991 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690921.10.0PREDICTED: transcription factor bHLH84-like
SwissprotQ7XHI92e-63BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A1U8JKW40.0A0A1U8JKW4_GOSHI; transcription factor bHLH84-like
STRINGGorai.005G231900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-51bHLH family protein