PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1895
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 320aa    MW: 36312.7 Da    PI: 6.7769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1895genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88e-08169214555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+e  r+RR++  ++   L++l+P++     kK++ a++L++A +YI+ Lq
  Gh_D02G1895 169 HSELARKRRQKRSDKTRCLQKLMPWD-----KKMDVATMLQEAYKYIRFLQ 214
                  89999********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.786164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-11167224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5169214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.13E-7169218No hitNo description
Gene3DG3DSA:4.10.280.109.5E-10169221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-6170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKMEEYDFCS TLHPLHSYAP SPFTSSVHNP EFNNMMINSH EPKLFNDPNL RSLLPLPYEP  60
DGPCCFFTPD PDPDPIFPSL PLPDLDFSLF SSDIPDPASH PLLNLPSPPL FLSDLRPLHR  120
LPPLSASSTP KSKRTRLDLV LSHSDNNPQT LDSIVKSFNA PPPPPIIPHS ELARKRRQKR  180
SDKTRCLQKL MPWDKKMDVA TMLQEAYKYI RFLQAQVSIL QSMPITSSFV STTQHLNNAS  240
FEVDFAGLER LNRQQLLQVL INSPMAQTML CSQGLCVFAT EQLVSLNKAK ERKTMLQQFL  300
FGRESDRLSD IAFVCACDEY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666500.10.0PREDICTED: transcription factor bHLH117-like
TrEMBLA0A1U8HKB30.0A0A1U8HKB3_GOSHI; transcription factor bHLH117-like
STRINGGorai.005G208700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-28bHLH family protein