PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G1846 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 411aa MW: 45741.3 Da PI: 6.5174 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 201 | 251 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Gh_D02G1846 201 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 251 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.27E-33 | 200 | 260 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-23 | 201 | 259 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-32 | 201 | 259 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-40 | 201 | 264 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.932 | 201 | 258 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-11 | 202 | 213 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-12 | 202 | 251 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-11 | 224 | 240 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MTEANNRGKS QKGVVDETEK MTTFQDGETE KGKHLDSGSE RRQWKPVFDE ASISQRPLKK 60 ICSPERHHPL PSSASLAHHS SPSSSSSSSS SSSSSSSSLP SSRLVFPFAF DASQPPIFFP 120 RQYGNTQQQQ QQHGLIYRPL YAAETSLSPQ QQQQQQQLLQ YWSDALNLSP RGRMMTTTTR 180 LGQDGGPMFR PPLQPVHTTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEDAALA 240 YDREAFKLRG ENARLNFPEL FLNKDKDTSS PTPTSTVSSP QTPHESSKQE QGPTLEINPP 300 PPAQPQGDNP DSDEMHITAA EGSSGAGEGV SGSQELVWGD MAEAWFNTIP AGWGPASPVW 360 DDLDTTNNLL FPSNLPFTNQ NQQELNDSDH QKQHVSASAS SPMKPFFWKD Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-21 | 200 | 258 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU532310 | 0.0 | EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016692274.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A1U8JVI4 | 0.0 | A0A1U8JVI4_GOSHI; ethylene-responsive transcription factor ERF054-like | ||||
STRING | Gorai.005G202900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 2e-50 | ERF family protein |