PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1802

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

VOZ

Protein Properties

Length: 451aa MW: 50407.4 Da PI: 5.0581

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1802	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	440.1	2.9e-135	200	416	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdl 98 pppsaf+gpkcalwdctrpaqgs+w+qdycssfhatlalne++pgttp+lrp+gi+lkd+ll++a++ak+qgk+vgip+cegaat+kspwna+elfdl Gh_D02G1802 200 PPPSAFMGPKCALWDCTRPAQGSDWFQDYCSSFHATLALNEDPPGTTPILRPGGISLKDNLLLDAVRAKAQGKNVGIPQCEGAATMKSPWNATELFDL 297 89********************************************************************************************** PP VOZ 99 sllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksa 196 sllege irewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkef+g+krsyymdpqps+++ewhl+eyei+ +da+alyrlelkl+++kks+ Gh_D02G1802 298 SLLEGEIIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFAGQKRSYYMDPQPSGKYEWHLFEYEIYGCDAFALYRLELKLANQKKSP 395 ********************************************************************************************** PP VOZ 197 kgkvskdsladlqkklgrlta 217 k+kv kdsladlqkk+grlta Gh_D02G1802 396 KAKVPKDSLADLQKKMGRLTA 416 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MQNNSSKNKC TSASHQQMVD NAKNRLNFLQ EQFTDLQAAR KEGRAGDVAV LEEQVYQNLR 60 EWKAELCTPS PASSLLGSLG SFSDDINRLL QLYEEEDDAT SPLKEPAVLK PEIDDQSLNP 120 STLPVIPEDY FVTHEPQEQS FQGFDLCKVS TSANADINYQ LDYHPFDLQQ DFDHEHLLDA 180 NGTEDYVKDA NSNMLPNISP PPSAFMGPKC ALWDCTRPAQ GSDWFQDYCS SFHATLALNE 240 DPPGTTPILR PGGISLKDNL LLDAVRAKAQ GKNVGIPQCE GAATMKSPWN ATELFDLSLL 300 EGEIIREWLF FDKPRRAFES GNRKQRSLPD YSGRGWHESR KQVMKEFAGQ KRSYYMDPQP 360 SGKYEWHLFE YEIYGCDAFA LYRLELKLAN QKKSPKAKVP KDSLADLQKK MGRLTAEVPG 420 DDKPPGKGKT KANKKAATAA AAVANVNSAQ D

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MQNNSSKNKC TSASHQQMVD NAKNRLNFLQ EQFTDLQAAR KEGRAGDVAV LEEQVYQNLR  60
EWKAELCTPS PASSLLGSLG SFSDDINRLL QLYEEEDDAT SPLKEPAVLK PEIDDQSLNP  120
STLPVIPEDY FVTHEPQEQS FQGFDLCKVS TSANADINYQ LDYHPFDLQQ DFDHEHLLDA  180
NGTEDYVKDA NSNMLPNISP PPSAFMGPKC ALWDCTRPAQ GSDWFQDYCS SFHATLALNE  240
DPPGTTPILR PGGISLKDNL LLDAVRAKAQ GKNVGIPQCE GAATMKSPWN ATELFDLSLL  300
EGEIIREWLF FDKPRRAFES GNRKQRSLPD YSGRGWHESR KQVMKEFAGQ KRSYYMDPQP  360
SGKYEWHLFE YEIYGCDAFA LYRLELKLAN QKKSPKAKVP KDSLADLQKK MGRLTAEVPG  420
DDKPPGKGKT KANKKAATAA AAVANVNSAQ D

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.8321	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC166092	9e-35	AC166092.4 Glycine max cultivar Williams 82 clone gmw1-93l19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016692526.1	0.0	PREDICTED: transcription factor VOZ1-like isoform X1
Refseq	XP_016692527.1	0.0	PREDICTED: transcription factor VOZ1-like isoform X1
Refseq	XP_016692528.1	0.0	PREDICTED: transcription factor VOZ1-like isoform X1
Swissprot	Q9SGQ0	1e-177	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8JQH1	0.0	A0A1U8JQH1_GOSHI; transcription factor VOZ1-like isoform X1
STRING	Gorai.005G198500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11060	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-170	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]