PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G1728 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25441 Da PI: 8.4838 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.8e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+++p++ ++q++++ +++k++G++ +l+l++a pe+ r+++++sl+yeA+ r+ +PvyG++g+++++++ +q++++ Gh_D02G1728 4 SCNGCRVLRKGCTENCTIRPCLqwiksSDSQANATLFLAKFYGRAGLLNLIEAGPENLRPAIFRSLLYEACGRVVNPVYGSIGMLWSGNWGECQAAVD 101 6*********************9998777889****************************************************************99 PP DUF260 94 lallke 99 ++l ++ Gh_D02G1728 102 AVLKGS 107 988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.596 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.7E-23 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCTENCT IRPCLQWIKS SDSQANATLF LAKFYGRAGL LNLIEAGPEN 60 LRPAIFRSLL YEACGRVVNP VYGSIGMLWS GNWGECQAAV DAVLKGSPIT QTSSSLESVE 120 EEQPISPLKT YDIRHVFKDT KPAAAADIDK VKTRTRFKRS RTRSKRQVVD SWMSQLGNGD 180 SKEDESTFSV ETVEGSLVNH AKRGPILKFE DSSNVGLELT LALLPEATHL G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 165 | RTRSKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10758 | 0.0 | boll |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX585561 | 5e-47 | JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016692651.1 | 1e-173 | PREDICTED: LOB domain-containing protein 42-like | ||||
Swissprot | Q9CA30 | 1e-81 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A1U8JQW4 | 1e-171 | A0A1U8JQW4_GOSHI; LOB domain-containing protein 42-like | ||||
TrEMBL | A0A2P5XAC9 | 1e-171 | A0A2P5XAC9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G190300.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 4e-78 | LOB domain-containing protein 42 |