PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1400
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 571aa    MW: 61557.3 Da    PI: 9.0472
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1400genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-055577123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k F r  nL+ H r H
  Gh_D02G1400 55 FICEVCNKGFQREQNLQLHRRGH 77
                 89*******************88 PP
2zf-C2H213.20.00027131153123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k++  +s+ k H +t+
  Gh_D02G1400 131 WKCEKCSKRYAVQSDWKAHSKTC 153
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121712.1E-55477IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00525577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.995577IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-55577IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.41E-75577No hitNo description
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035510096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-5119152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.41E-7126151No hitNo description
SMARTSM00355130131151IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MAAASSSTPF FGTREENQNQ MMQVQSSTAT PTSSTAPTTA PQKRKRNHPG TSCKFICEVC  60
NKGFQREQNL QLHRRGHNLP WKLRQKTTKE VKRKVYLCPE PTCVHHDPSK ALGDLTGIKK  120
HYSRKHGEKK WKCEKCSKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD  180
ALAQESARHP TNLSTMGSHH LFGGNHHMSL GLSHVGSQIP PLQDQNQVQP SSNLLRLGST  240
SGAVKFDHLI SPSNPSSLQN MPSSMFFMAE AANQGFHQDH QSHHGHGLYP NKPLHGLMQL  300
PDLQGSTNNS PTSSNFFNLG FFSNTSATSS ISTSEIGGGQ GPALFPSNMG DQVGSGMSSL  360
YTTSMQHENI SPHMSATALL QKAAQIGSTT SNNTTSTLLR GLGSSLSGGT KSDRPVFSPN  420
FGSNFEGGNG SETLRSHMED DSNLQGLMNS LAANGNSSIF DGGPSHGQDN NFGGFNGSGL  480
TLEPQSSNAN FCNVNEAKLH QNLAAGIGGT DKLTLDFLGV GGMVGNISGG FSQREQHGIN  540
ISSLEPDMKS SVQPNTEHFG HAKLAKAPRQ A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34127188364Zinc finger protein JACKDAW
5b3h_F3e-34127188364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.46930.0ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693137.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_016693138.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBLA0A1U8JWJ80.0A0A1U8JWJ8_GOSHI; protein indeterminate-domain 5, chloroplastic-like isoform X1
STRINGGorai.005G158200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-103indeterminate(ID)-domain 5