PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1291
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 273aa    MW: 29294.3 Da    PI: 5.6649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1291genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.58.6e-11168187221
                  --SS-EEEEEEE--TT-SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefp 21 
                  +Dgy+WrKYGqK vk+s+fp
  Gh_D02G1291 168 EDGYRWRKYGQKAVKNSPFP 187
                  8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-11152187IPR003657WRKY domain
SuperFamilySSF1182901.31E-8159188IPR003657WRKY domain
PROSITE profilePS5081112.059162187IPR003657WRKY domain
SMARTSM007746.9E-4167211IPR003657WRKY domain
PfamPF031069.0E-7168188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEDKEGVDPA SEFTSDSSWA LAGGPDSVSD SVNYFFDRES NILSEFDWNL QPDHAEQIDR  60
FDELDRADTK PYLAGSFSGS HSCVAAAAAA CGSGSGSGTA SSPAGGSADV STLIPSVSSS  120
SGEDPSEKHT GSGGKPPEIP SKARKKGQKR IRQPRFAFMT KSEVEHLEDG YRWRKYGQKA  180
VKNSPFPSVG FPRGGLISRE AAFAGRFTPS VSQFYYPHGE IPASIIRSQQ VPIEIVESRT  240
LPQTTNEGLL GDIVPPGIRN RGGRDHCGMC YIL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698100.0KF669810.1 Gossypium hirsutum WRKY transcription factor 33 (WRKY33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478744.10.0PREDICTED: probable WRKY transcription factor 57 isoform X2
TrEMBLA0A2P5QF290.0A0A2P5QF29_GOSBA; Uncharacterized protein
STRINGGorai.005G144500.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49952753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-32WRKY DNA-binding protein 57