PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1259
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 256aa    MW: 28329.4 Da    PI: 8.3924
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1259genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.33.6e-33357457
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                 + YkeClkNhAaslGgha+DGCgEfmp+++++ +++a++kCaACgCHRnFHRr++
  Gh_D02G1259  3 LSYKECLKNHAASLGGHALDGCGEFMPTPSATpTDPASFKCAACGCHRNFHRRDP 57
                 68*****************************99********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.3E-28456IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.997556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-30556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-17559IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.46E-19131202IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-29132203IPR009057Homeodomain-like
TIGRFAMsTIGR015654.8E-27141198IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVLSYKECLK NHAASLGGHA LDGCGEFMPT PSATPTDPAS FKCAACGCHR NFHRRDPYDG  60
PAFIHRLPPP PNPSSSPSPT HSPGPSRTPP SPVPFSYYSS APHMLLALST AYSGPMDEYH  120
YHLSNSNPSV SRINNNNPSG RKRSRTKFTK EQKEKMHAFA ERLGWRMPKG EEKLIQEFCN  180
EVGVNRGVLK VWMHNNKNTF SKKEILSVGN LNLHDSHDNN NNIEDNGNAL DSNSHMHNNE  240
DSIQLHISTN NGSSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-221421991875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.117970.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691109.10.0PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ18e-76ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A1U8JS500.0A0A1U8JS50_GOSHI; zinc-finger homeodomain protein 11-like
STRINGGorai.005G141400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.15e-56zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]