PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1179
Common NamebHLH130
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 184aa    MW: 20692.1 Da    PI: 10.1694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1179genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.6e-111667555
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                  +++E++RR++++   ++L +l+P+ ++k++++  s  + L +A  YIk+L+
  Gh_D02G1179 16 RKAIEKKRRNDMKILCSKLASLIPHhNFKPSKEIASQQDQLDLAAVYIKHLR 67
                 579**********************999999999****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.0551166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-101571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.49E-41671No hitNo description
SuperFamilySSF474595.63E-101686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-71766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-41772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKKNSCGGQS NSKPDRKAIE KKRRNDMKIL CSKLASLIPH HNFKPSKEIA SQQDQLDLAA  60
VYIKHLRERI EKLKRLKEEA MRSMEASSSM MERTASVGLT SPVLELRDLG SSIELVLITG  120
LNKNFMLYEV ISIFEQEGAE VVSASFSTVG GKIFHTLHAQ AKLSRVGVET TRVCQRLQEL  180
IKSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.91800.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738599770.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4600320.0KF460032.1 Gossypium hirsutum cultivar Sumian No.22 bHLH transcription factor (bHLH130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741827.11e-133PREDICTED: uncharacterized protein LOC107951333
RefseqXP_016741828.11e-133PREDICTED: uncharacterized protein LOC107951333
TrEMBLA0A2P5Q7G41e-132A0A2P5Q7G4_GOSBA; Uncharacterized protein
TrEMBLU5ZZJ11e-132U5ZZJ1_GOSHI; BHLH transcription factor
STRINGGorai.005G136000.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-21bHLH family protein