PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G0929 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 429aa MW: 48265.9 Da PI: 8.1418 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.6 | 4.7e-18 | 12 | 99 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 v+ s++++ + l++p f ++ +g s + l+ +sg sW+v+l ++ + ++ +GW +Fv ++ L+ gDf+vF++dg+ f vkvf++ Gh_D02G0929 12 VF--SSTSSANSLRIPVGFNRNLEGR--VSASVLLKGPSGYSWNVRL--VQRNDDLLFDEGWADFVADHSLECGDFLVFRYDGDLVF--DVKVFDQ 99 44..77788888*******9888766..4557***************..777778**************************998777..9999987 PP | |||||||
2 | B3 | 52.6 | 8.1e-17 | 227 | 320 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++++ +v+ s l +p +fa eh ++++++l+l++++g W+v+ ++ +++l +GW +Fv++n++k+gD+++F+l + +fe++v+++r Gh_D02G0929 227 VRIMKRFNVSGSYTLNIPYQFAMEHL--PNCKTELVLQNLKGACWTVNSVPtTRVHTSHTLCGGWLSFVRSNEIKAGDICIFELAH--KFEFRVHILR 320 56677778888899********9996..45899***************954566666799***********************866..8888999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-23 | 3 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-23 | 4 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.45E-17 | 7 | 98 | No hit | No description |
PROSITE profile | PS50863 | 15.312 | 7 | 100 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-13 | 9 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-15 | 11 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-23 | 217 | 320 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-24 | 219 | 321 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.16E-18 | 224 | 320 | No hit | No description |
PROSITE profile | PS50863 | 13.465 | 226 | 322 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-14 | 226 | 320 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-14 | 226 | 322 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MSKLRRPHFL NVFSSTSSAN SLRIPVGFNR NLEGRVSASV LLKGPSGYSW NVRLVQRNDD 60 LLFDEGWADF VADHSLECGD FLVFRYDGDL VFDVKVFDQS SCEKEVAFHC KCSQAGSVFN 120 GILGQKRYRE EEDVSLDQDC EELLKRIRQS SSESVRDEEH CGRELILATT SCQGLTSCDE 180 NHDGTILKIT GKEDDLNLHG SGCIQMIGEF EEKKVAQSFN SCFPFFVRIM KRFNVSGSYT 240 LNIPYQFAME HLPNCKTELV LQNLKGACWT VNSVPTTRVH TSHTLCGGWL SFVRSNEIKA 300 GDICIFELAH KFEFRVHILR VGQEDLDRQS RKAVLDRSDS TLLKKLVKNT SKVHSKLKKV 360 QICDNKGSKV LDKWKYGNAA KKSASFVLCS LSRSGTGKQE AAISGLRMMV TVDEEKAARS 420 FASRFPSFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 9e-15 | 8 | 102 | 10 | 104 | At1g16640 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15797 | 1e-119 | boll |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109886751 | 1e-119 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016694184.1 | 0.0 | PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1 | ||||
TrEMBL | A0A1U8K0U4 | 0.0 | A0A1U8K0U4_GOSHI; B3 domain-containing protein Os11g0197600-like isoform X1 | ||||
STRING | Gorai.005G105400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16907 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-22 | B3 family protein |