PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0706

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 449aa MW: 51609.3 Da PI: 6.2875

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0706	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.7	2.1e-25	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++e+ g+ +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d + Gh_D02G0706 121 KWTDKMVRLLITAVSYIGEDAAGGCgggmrrkfaviQKKGKWKSVSKVMAERSYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDVI 217 7*******************998899999999**********************************************569999888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.3E-23	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MEGNLSQGGM IPGGGSFGGL DLQGSMRVHN HAQNPHSIHQ HHHPNPRQGA SLHASIHEDF 60 PLKMGNIQNS DQIISLMDYN KGERGKSSVS DEDEPSFTEE GIDGHNDGSK GKKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED AAGGCGGGMR RKFAVIQKKG KWKSVSKVMA ERSYHVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPQLQ RSLQLAFRIK DDQEKDDAKR HRHDDNDDDD DDDDDMETDD 300 HDDFEENHAS HGDDRGIYRV LGGSAKRSRQ VQVHEDACFH NSSNSQDCNK NSFPYPPPAQ 360 ADINQAPPEN PRAAWLQKQW IESCSLQLEE QKLQIQVEML ELEKQRFKWQ RFSKKRDREL 420 EKMRMENERM KLENERMALE LKRKELDAD

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MEGNLSQGGM IPGGGSFGGL DLQGSMRVHN HAQNPHSIHQ HHHPNPRQGA SLHASIHEDF  60
PLKMGNIQNS DQIISLMDYN KGERGKSSVS DEDEPSFTEE GIDGHNDGSK GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED AAGGCGGGMR RKFAVIQKKG KWKSVSKVMA ERSYHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPQLQ RSLQLAFRIK DDQEKDDAKR HRHDDNDDDD DDDDDMETDD  300
HDDFEENHAS HGDDRGIYRV LGGSAKRSRQ VQVHEDACFH NSSNSQDCNK NSFPYPPPAQ  360
ADINQAPPEN PRAAWLQKQW IESCSLQLEE QKLQIQVEML ELEKQRFKWQ RFSKKRDREL  420
EKMRMENERM KLENERMALE LKRKELDAD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21694	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016693778.1	0.0	PREDICTED: uncharacterized protein LOC107910455
TrEMBL	A0A1U8JYF8	0.0	A0A1U8JYF8_GOSHI; uncharacterized protein LOC107910455
STRING	Gorai.005G079200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-171	sequence-specific DNA binding transcription factors