PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0682
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 631aa    MW: 70819.1 Da    PI: 4.7961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0682genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.6e-53211472128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  ppGfrFhPtdeelv +yLk+k+ +k+l+l ++i+e+d+yk++P++Lp k  +k+++++w+fF++rd+ky++g r+nrat +gyWkatgkd+++++ ++
  Gh_D02G0682  21 PPGFRFHPTDEELVLYYLKRKICKKRLKL-DIIRETDVYKSDPEELPgKsVLKNGDRQWFFFCPRDRKYPNGARSNRATIHGYWKATGKDRSITC-NS 116
                  8****************************.99***************6447788999**************************************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kktLvfy+grap+ge+tdWvmhey+l
  Gh_D02G0682 117 RVVGIKKTLVFYRGRAPNGERTDWVMHEYTL 147
                  9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6017170IPR003441NAC domain
PROSITE profilePS5100555.67820170IPR003441NAC domain
PfamPF023651.3E-2721147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MKVTATAVTV DSGFGDDQVW PPGFRFHPTD EELVLYYLKR KICKKRLKLD IIRETDVYKS  60
DPEELPGKSV LKNGDRQWFF FCPRDRKYPN GARSNRATIH GYWKATGKDR SITCNSRVVG  120
IKKTLVFYRG RAPNGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ  180
YGAPFKEEAW DDEEYSSNPL DSITPVKPPN EVIPDDNVKA NVQSESPLSD IEEFMKQFAD  240
EPALPQPQAY HSHVLPQVVS AEDTQSTLLD PSPRGVLFPE QLTVLHGQAS FEFSESPISQ  300
LLLQEAPEVT PVTDHLDQLP QLCEEDFLEI DDLLGPEPLI SNIEKPVENK QFNELDGLSE  360
FDLYHDAAMF LQDMGSIDQG TVPFLYDNMI NQVSYQLEPQ SNISLMNQQY LSHSNLNLID  420
KQWQNQANAN MMEQHLQPQL NASGGNMLNQ MVYQSGPNIN SMDQQSVLHS SVDQVDYHGQ  480
NQQLQMDQIN GALWTHDQSG DVFIPSGSNL GNASPTSGFV NNGPKQDQGN KNDGSGGGSW  540
FSSSLWSFVD SIPTAPASAA ESPLVNRALE RMSSFSKLRI HAMNTAVNGS ASARRRSRNR  600
GFFFISILGA LCAVLWFLIG TVRVLGRSIS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-492114716140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13847KRKICKKRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.67980.0boll| leaf| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472220.0KC847222.1 Gossypium hirsutum NAC domain protein NAC45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693823.10.0PREDICTED: NAC domain-containing protein 17-like isoform X1
TrEMBLA0A1U8JYK20.0A0A1U8JYK2_GOSHI; NAC domain-containing protein 17-like isoform X1
STRINGGorai.005G076200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-110NAC domain containing protein 17