PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G0406 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 27388.6 Da PI: 10.1347 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.1e-08 | 83 | 131 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ +h ++Er RR++ +++++ L ++lP +K++K +i+++A+ +++L Gh_D02G0406 83 RCLKHMMNERTRREKQKKCYFALYSMLPLG-----TKNDKNSIVQMATMRVREL 131 57799***********************97.....79**********9888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.74E-6 | 81 | 125 | No hit | No description |
SuperFamily | SSF47459 | 3.78E-11 | 81 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.538 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-6 | 83 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-8 | 86 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0036 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDELIKQLLG EHGTIWYETT PVLQPVRPSA FQPYPRTPRT EPWLEAAGCN NGVRSGNVNK 60 RMIEFLRKTN WVSVISKDKQ KQRCLKHMMN ERTRREKQKK CYFALYSMLP LGTKNDKNSI 120 VQMATMRVRE LEMEREELQR RNSELLVNLG GNANNEGAKI RARIDDPSYG NDYMLEVLKC 180 LKTLDSKPRM IRTTVYNQEL VLDLATKMKA ADVENAINRT LQEVERKLEE RRTR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016714378.1 | 1e-174 | PREDICTED: transcription factor bHLH92-like | ||||
TrEMBL | A0A1U8LLQ2 | 1e-173 | A0A1U8LLQ2_GOSHI; transcription factor bHLH92-like | ||||
STRING | Gorai.005G046700.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24448 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 5e-27 | bHLH family protein |