PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0043
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 306aa    MW: 34487.2 Da    PI: 6.4185
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0043genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.11.8e-23132193159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDgy+WrKYGqK++ ++++prsY+rCt++   gC+++k+ ++ ++dp    ++Y g+H+++
  Gh_D02G0043 132 VDDGYAWRKYGQKQILNANHPRSYFRCTHKtdqGCQATKQAQKLEDDPPKYATIYYGHHTCK 193
                  59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-24118193IPR003657WRKY domain
PROSITE profilePS5081120.541127190IPR003657WRKY domain
SuperFamilySSF1182901.14E-23128193IPR003657WRKY domain
SMARTSM007742.7E-35132194IPR003657WRKY domain
PfamPF031061.7E-23133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSWNTKKAIE ELVRGKELTK QLRDLLTKSL TDDGFVDSEG LVLKICDTFA NTLSLLTNSN  60
TTTTTAVPDY YYNDDLNDVS QKPTINITSD SRKSEDSGDS FKSPPSTLRD RRGSYKRRKC  120
VDSRKKITSA LVDDGYAWRK YGQKQILNAN HPRSYFRCTH KTDQGCQATK QAQKLEDDPP  180
KYATIYYGHH TCKNKLKPCH FMVDDSTCNN DSSILLSFAN DSTLTNKQGN DNPFFSSVKQ  240
ESKEDYKPIS EITYNGSSSS DYLLSPHHHQ LSTFDLSSAD MAVLSPDPDV LSDVVDSVHL  300
DDLLQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-22132193869OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.252080.0stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384530.0KM438453.1 Gossypium aridum WRKY5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016685390.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1U8J4X10.0A0A1U8J4X1_GOSHI; probable WRKY transcription factor 70
STRINGGorai.005G003900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167191012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-32WRKY DNA-binding protein 70