PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G1966

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 634aa MW: 69179.1 Da PI: 7.2389

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G1966	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	365	402	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Gh_D01G1966 365 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 402 554458******************************88 PP
2	BELL	127.3	5.7e-41	228	299	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eVd+rY+qy++q+q+vissFe++ag+gsak YtslAlk+iS++FrcLkdai++qi Gh_D01G1966 228 ERQEIQMKKAKLISMLDEVDQRYRQYHHQMQIVISSFEQAAGIGSAKTYTSLALKTISKQFRCLKDAITGQI 299 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-65	154	297	IPR006563	POX domain
Pfam	PF07526	5.5E-49	159	296	IPR006563	POX domain
PROSITE profile	PS50071	12.179	343	406	IPR001356	Homeobox domain
CDD	cd00086	4.17E-12	346	407	No hit	No description
SMART	SM00389	3.7E-9	346	410	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	347	412	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-28	349	412	IPR009057	Homeodomain-like
Pfam	PF05920	4.2E-18	363	402	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MATYFHGNPE IQAPDGLQTL VLMNPAYVQY SDTTPPPQPN NLVFHAPPPP HTQQFVGVPL 60 TATSTAIQDP PSHEISPLHG LVQRVHYNLY NPIDPSGAAR ETPRAQQGLS LSLSSQQQRH 120 HHGYGSHAQA VSGEDMRVSG GSGSSGSGVT NGVSGVQSML FSSKFLKAAQ ELLDEVVNVN 180 NTGITKNELA KKGSGGGDNS NIGKAVGESA AAAGDADGKQ GPELTTAERQ EIQMKKAKLI 240 SMLDEVDQRY RQYHHQMQIV ISSFEQAAGI GSAKTYTSLA LKTISKQFRC LKDAITGQIR 300 AAKQSLGEED CLGGSKIEGS RLKLVDHHLR QQRALQQLGM IQHNAWRPQR GLPERSVSVL 360 RSWLFEHFLH PYPKDSDKVM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEEIKEQE 420 QNGSEEKTSK SHNNEDSTSK STAPDKTSTD NKQDNNIPNQ NGCSSMSASM ASASPLIGNQ 480 SGFSFIGSSE LEGITQGSPK KPRTNNEVTM KFDKDGYTFM GGTTNNDFMG GFGQYPIGEI 540 TRFDTEQFTP RFSGNGVSLT LGLPHCENLS LSGTPHQTFL PNQAMQMGRR VDIGEPNEFG 600 SINPSTPHSS AAYDNINIQN RKRFAAQLLP DFVA

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MATYFHGNPE IQAPDGLQTL VLMNPAYVQY SDTTPPPQPN NLVFHAPPPP HTQQFVGVPL  60
TATSTAIQDP PSHEISPLHG LVQRVHYNLY NPIDPSGAAR ETPRAQQGLS LSLSSQQQRH  120
HHGYGSHAQA VSGEDMRVSG GSGSSGSGVT NGVSGVQSML FSSKFLKAAQ ELLDEVVNVN  180
NTGITKNELA KKGSGGGDNS NIGKAVGESA AAAGDADGKQ GPELTTAERQ EIQMKKAKLI  240
SMLDEVDQRY RQYHHQMQIV ISSFEQAAGI GSAKTYTSLA LKTISKQFRC LKDAITGQIR  300
AAKQSLGEED CLGGSKIEGS RLKLVDHHLR QQRALQQLGM IQHNAWRPQR GLPERSVSVL  360
RSWLFEHFLH PYPKDSDKVM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEEIKEQE  420
QNGSEEKTSK SHNNEDSTSK STAPDKTSTD NKQDNNIPNQ NGCSSMSASM ASASPLIGNQ  480
SGFSFIGSSE LEGITQGSPK KPRTNNEVTM KFDKDGYTFM GGTTNNDFMG GFGQYPIGEI  540
TRFDTEQFTP RFSGNGVSLT LGLPHCENLS LSGTPHQTFL PNQAMQMGRR VDIGEPNEFG  600
SINPSTPHSS AAYDNINIQN RKRFAAQLLP DFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	352	410	5	63	Homeobox protein Meis2
3k2a_B	2e-15	352	410	5	63	Homeobox protein Meis2
4xrs_A	2e-15	352	409	1	58	Homeobox protein Meis1
4xrs_B	2e-15	352	409	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.6695	0.0	boll\| leaf

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016714853.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1U8LN19	0.0	A0A1U8LN19_GOSHI; BEL1-like homeodomain protein 1
STRING	Gorai.002G234900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5008	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-171	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]