PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G1870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23112.1 Da PI: 4.783 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 27 | 77 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa ++l+g Gh_D01G1870 27 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 77 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.2E-35 | 28 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-11 | 28 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-19 | 28 | 86 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-30 | 28 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.812 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.22E-19 | 31 | 87 | No hit | No description |
PRINTS | PR00367 | 1.4E-8 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVKRDQQKIL QAEASKQMTP SSSSCKKKYK GVRMRSWGSW VSEIRAPNQK TRIWLGSYST 60 PEAAARAYDA ALLCLKGSSA SLNFPNTSLD YIPDAIMSPK SIQRVAAAAA ANSFPDNGIS 120 SSTTAPVSPI PSSLVSSPSM ASSPSDQVDD VSLIQSLESI SMMEPWYTSF DDLQSPKYID 180 QMFNLVPFDP PTVMDDFYEE LSDIRLWSFP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16582 | 1e-60 | ovule |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 73865425 | 1e-60 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616776 | 3e-73 | JX616776.1 Gossypium hirsutum clone NBRI_GE61662 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467927.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor ERF014-like | ||||
Swissprot | Q9SFE4 | 6e-46 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A0A2P5S4J6 | 1e-149 | A0A2P5S4J6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.002G220900.1 | 1e-149 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28361 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 3e-35 | ERF family protein |
Publications ? help Back to Top | |||
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