PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G1182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 716aa MW: 78031.7 Da PI: 6.353 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.8 | 7.8e-08 | 305 | 325 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg Gh_D01G1182 305 PCPDFRK-GTCRRGDMCEYAHG 325 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.8E-17 | 40 | 176 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 9.17E-17 | 84 | 183 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.12E-15 | 86 | 165 | No hit | No description |
Pfam | PF12796 | 2.2E-10 | 87 | 156 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0018 | 87 | 117 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 17.767 | 87 | 163 | IPR020683 | Ankyrin repeat-containing domain |
PRINTS | PR01415 | 6.0E-5 | 88 | 103 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2.7E-4 | 122 | 154 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.396 | 122 | 157 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 6.0E-5 | 141 | 155 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 3.1E-6 | 300 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-5 | 305 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 305 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.911 | 305 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 333 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 65 | 335 | 358 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MCCGSERLNS KLTPRTSNSS FEDNRLPRVD MNHLTVATED TFASLLELAA NNDVEGFKRS 60 MEHDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVASMYGS IDVIKLILSS SDADVNRLCG 120 RDKSTALHCA ASGGADNVID VVKLLLAAGA DVNTVDANGH LPVDVIVVPP KLGAVKSTLE 180 ELLAIEGSGF DWNSQLAAVA NSDSFPLLPL KENGSLSSGS DSPMKSKPID APISSASEKK 240 EYPIDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGTCRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHTADE 360 LRPLYVSTGS AVPSPRLSTS GATAMDFAAA MSVLPGSPSS VSVMSPSPFT PPMSPSMNGM 420 SHSNVGWPQP NVPALHLLGS NLQSSRLRSS LNARDIQAED FNLLSDFDVQ QLRLMNELPR 480 LTQPSMSSSS FNRSGRMKTL TPSNLDDLFS AESSSPRYSD QAMAAAVFSP THKSAVLNQF 540 QQQQNMLSPI NTNFSPKSIE HPLLQASLSG RMSPRNVEPI SPMSSRVSML AQREKQQQFR 600 SLSSRELGSG SAAIVGSPVN SWSKWGSSNG KPDWAVNADG LDKHRRSSSF ELGNGDEPDL 660 SWIQSLVKES PTEIKEKIAA PVSGEVSSVN ADPVDNAVLG AWLEQMQLDQ LVAQQN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.7326 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016707563.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1U8L2I6 | 0.0 | A0A1U8L2I6_GOSHI; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | Gorai.002G152300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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