PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1094
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 673aa    MW: 70845.6 Da    PI: 6.7114
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1094genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08204249145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                      r++W++ Ed+ l+ av++ G g+W+ I r      Rt+ q+  rw 
      Gh_D01G1094 204 RKPWSEAEDLELIAAVQKCGVGNWANILRGDFkGDRTASQLAQRWT 249
                      789************************98422359*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.342199256IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-12200252IPR009057Homeodomain-like
SuperFamilySSF466892.66E-12201257IPR009057Homeodomain-like
SMARTSM007175.4E-11203254IPR001005SANT/Myb domain
PfamPF002493.9E-7204249IPR001005SANT/Myb domain
CDDcd116608.89E-14205253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MIQNTKKQKK GSISEEDIST LLQRYTATTV LALLQEVAQF PGVKLDWNAL VKKTSTGISN  60
AREYQMLWRH LAYRDVLLEK LEDGADPLDD DSDLEYELEP CPSVSSETSA EAAACVKVLI  120
ASGLPNDSSL ANSSMVDAPL TINIPNARSF RVSSENLQPS CSMPGTNITV PVSVQKKILP  180
SVTSAETMEG NGPAGANLPA RRKRKPWSEA EDLELIAAVQ KCGVGNWANI LRGDFKGDRT  240
ASQLAQRWTV IKKRCGNLNV EGNSAIPQLS EAQLATRSAL SLALDMPDKN LTAACTNNPG  300
LKIMSSSAPP TAGGEASAQA QSQVQQGPLA SVEAPIQSQQ GPIASVSSRN RSQEGPITSA  360
SPQNPSQQGP VASVQVPNQS QQGSMPTKTS PRGSSGSTLK SRVTLKKAPA KPFSTTGSIL  420
DATAVAAGAR IGSPEAAASL LKAAQSKNAI HIMTTAGSSV KPVIPSGTSS QYVCTGLTAE  480
AHSSPVTSST LHPGSVKTAT QRVEHTSSVS LSINAPMQQC NAVTSGTAVE VSPKEDLEIK  540
GSVSDSLPKE QVRENRAYVP KNERGEEVKE HKEALTNPGS ELKNIEAVVE HPNEKLMVDG  600
DQVGVKANLV EESVNASDIK DCLLVKKSTT QPTAEESCRN HSMTEMTAKA GSLSDGCAKN  660
LEVLSTAETG RAT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.201130.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707822.10.0PREDICTED: uncharacterized protein LOC107922340
TrEMBLA0A1U8KZK40.0A0A1U8KZK4_GOSHI; uncharacterized protein LOC107922340
STRINGGorai.002G139000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-68MYB_related family protein