PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0702
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 565aa    MW: 61080.6 Da    PI: 7.1982
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0702genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30220277260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gh_D01G0702 220 EDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 277
                  7****************************************.***************85 PP
2WRKY106.31.6e-33383441159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Gh_D01G0702 383 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 441
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182909.81E-24218278IPR003657WRKY domain
SMARTSM007741.5E-32219277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-25219278IPR003657WRKY domain
PfamPF031061.9E-23220276IPR003657WRKY domain
PROSITE profilePS5081122.01220278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37368443IPR003657WRKY domain
SuperFamilySSF1182902.22E-29375443IPR003657WRKY domain
PROSITE profilePS5081138.825378443IPR003657WRKY domain
SMARTSM007743.1E-39383442IPR003657WRKY domain
PfamPF031063.4E-26384441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MEEQKLASSS SSSSSAVAAA TMQHDLSGSA GSGGARYKLV APAKLPISRS ACITIPPGLS  60
PSSFLESPVL LSDVKAEPSP TTGSLIKPQA VHASVACSTY SATTACSNAF DERNPSTFEF  120
RPHPRSNMAP ADLDPQRSEQ SRQIQIQYQA VSFNSSASVK SEMAGSSNVL SLSVPVHTAT  180
SVASAHAGVD AEELNQIGNP NGGMPSGQSD HRGVGPVSSE DGYNWRKYGQ KHVKGCEFPR  240
SYYKCTHPNC EVKKLFERSH DGQITEIIYK GTHDHPKPQP SRRYSSGNIM SGQEERSDKV  300
SSLNGRDDKS YCGYGQMAHS IEPNSTADIS PVTANDDNLD EIEDDDPFSK RRKMDGGIDI  360
TPVVKPIREP RVVVQTVSEV DILDDGYRWR KYGQKVVRGN PNPRSYYKCT NAGCPVRKHV  420
ERASHDPKAV ITTYEGKHNH DVPTAKTGSH DTAGAVAMCG PSRIRSEEND AISLDLGVGI  480
SSVPEHASNE HQQLHSELVQ SRPRTGGSSF KFVQPTMMAY YGALNGSMNQ YVSRENPSEG  540
RGVEITPLNH SYAFPQSMGR ILTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37220443877Probable WRKY transcription factor 4
2lex_A6e-37220443877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697610.0KF669761.1 Gossypium hirsutum WRKY transcription factor 17 (WRKY17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707292.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1U8KXX60.0A0A1U8KXX6_GOSHI; probable WRKY transcription factor 20
STRINGGorai.002G096200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein