PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G0073 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 550aa MW: 60669.4 Da PI: 4.5623 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.4 | 4.6e-43 | 194 | 320 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 ppG+rF Ptdeel+++yL kkv+++ l+ + i evd+y +eP +L + ++e+ewyfF++r+kky++g r+ r+t++g+Wk tg dk++ + + + Gh_D01G0073 194 PPGVRFVPTDEELIQYYLLKKVNNELLPS-NLIWEVDLYGTEPAKLTEsYEPNGESEWYFFTSRRKKYPNGGRPDRSTENGFWKPTGMDKSIPEGDLK 290 9*************************999.89**************8514445778**************************************9999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g kktL f++gr+p+g+kt+W mhey++ Gh_D01G0073 291 PIGSKKTLEFHTGRHPSGHKTEWKMHEYKV 320 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-47 | 191 | 348 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.278 | 193 | 348 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-23 | 194 | 319 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MAANIENQND ISNPSIASNM DATVLEGGEI VTTAENEDYN NRLIYSAATD GGAIAYEDSE 60 LATMMEDIFN QNSTLSCFAA ADGGATAYEV GQFFTQEEDI YNLNSVLNST VASNIDVTAF 120 EGGQFFTQEE NFYDQINVLS STVASNIETT AFEGGETVTT AENANNRNNI LNSSTASNGG 180 RTVAEVKDYI QSFPPGVRFV PTDEELIQYY LLKKVNNELL PSNLIWEVDL YGTEPAKLTE 240 SYEPNGESEW YFFTSRRKKY PNGGRPDRST ENGFWKPTGM DKSIPEGDLK PIGSKKTLEF 300 HTGRHPSGHK TEWKMHEYKV DPSLIKPQNK PQDGMTLDTC VLCKVYKTQR KGQNENYIES 360 FDQNTNTSSS SQIFDAGASS EATNVSYPMT GFAGQPDSEL YPLTTSPMPN YEYYSNTWFQ 420 PTVDGALNNE AFVPAPNRNN TVFRNRNSDT TWPPYHPYYS NGLLLHRGVN NGASTSTMAG 480 NYIDNNVRAL QVRPPNAALT QLTVNNGGPN SEAHSMAASR SNTMSRGRGE AQRGSRRGGN 540 RGKIIMLPRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-39 | 192 | 351 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468594.1 | 0.0 | PREDICTED: uncharacterized protein LOC105786622 | ||||
TrEMBL | A0A0D2M550 | 0.0 | A0A0D2M550_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G008500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24270 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-42 | NAC-like, activated by AP3/PI |