PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G0023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 264aa MW: 28662.8 Da PI: 6.2329 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.3 | 6.8e-08 | 88 | 147 | 3 | 59 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele...elkkevakl 59 e k +r NReA r++Rq+ ka+ + Le++v L + N++L k+l+ +l+ e+a+l Gh_D01G0023 88 EKKPKKRSLGNREAVRKYRQKVKARAASLEDEVVRLRTLNQQLLKRLQgqaQLEAEIARL 147 668889999************************************998333455555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.0E-12 | 85 | 154 | No hit | No description |
SMART | SM00338 | 5.6E-6 | 86 | 153 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14686 | 3.80E-10 | 87 | 145 | No hit | No description |
Pfam | PF07716 | 3.3E-12 | 88 | 143 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.32E-6 | 90 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDEGELDFSN HEVFSGGNSM GDIPSSCSMD SFFNEILNDS HACTHTHTCN PPGPDNSHTH 60 TCFHVHTKIV PASTEDEAAA DDTEGSREKK PKKRSLGNRE AVRKYRQKVK ARAASLEDEV 120 VRLRTLNQQL LKRLQGQAQL EAEIARLKCL LVDVRGRIEG EIGSFPYQKP TANNVNTLNL 180 PGAYLMNPCN IQCNDQMYCL QPEVEGNTGE ATALDGHGFN GCEFDDIQCL ASQNTGAKEL 240 PGGGVGSAAS NGNSSGTKRR KGKI |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109873117 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ355030 | 0.0 | DQ355030.1 Gossypium hirsutum putative retinoblastoma binding protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016715679.1 | 0.0 | PREDICTED: basic leucine zipper 23-like isoform X1 | ||||
Refseq | XP_016715680.1 | 0.0 | PREDICTED: basic leucine zipper 23-like isoform X1 | ||||
Swissprot | Q8GTS2 | 1e-109 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A1U8LR42 | 0.0 | A0A1U8LR42_GOSHI; basic leucine zipper 23-like isoform X1 | ||||
STRING | Gorai.002G003000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2036 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 1e-105 | bZIP family protein |
Publications ? help Back to Top | |||
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