PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G2278
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 197aa    MW: 22476.2 Da    PI: 6.3091
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G2278genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.11.1e-1482140563
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L ++l++ ++  +++ +e+
  Gh_A13G2278  82 RKQRRMISNRESARRSRMRKQKHLDELWSQVIRLRNENQSLLDKLNHVSESHDRVLQEN 140
                  79**********************************************99998888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.108.7E-54596IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003381.4E-1678142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.17480143IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.82E-1382132No hitNo description
PfamPF001702.1E-1282140IPR004827Basic-leucine zipper domain
CDDcd147022.00E-1983134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-1297155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVPGELRGLH YLAPENPILI PANLGMMQNS IPSFHFNTFE SSLPNSHIVP SAQEFAALSS  60
SISNTSTSDE AEEQQVYVID ERKQRRMISN RESARRSRMR KQKHLDELWS QVIRLRNENQ  120
SLLDKLNHVS ESHDRVLQEN ARLKEEASDL RQMLTDLKIG SPYSLSFRDL EEVPCNTAHL  180
KAESTNQSIA NSVDLLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRSRMRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675728.11e-143PREDICTED: basic leucine zipper 43-like
TrEMBLA0A1U8IH831e-142A0A1U8IH83_GOSHI; basic leucine zipper 43-like
STRINGGorai.001G251000.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-45basic leucine-zipper 42