PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G2022
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 696aa    MW: 79599.5 Da    PI: 8.9285
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G2022genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.2e-08487528145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE e+ ++ v+q+G + W++   t+g  + + ++k+ w+
      Gh_A13G2022 487 KRPWTPEEYEIVKKFVEQHGRN-WRLLGDTLG--KHRHHVKDTWR 528
                      569*****************66.********9..67888998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-4410477IPR009057Homeodomain-like
SMARTSM007171.7E-5413484IPR001005SANT/Myb domain
PROSITE profilePS500903.915416477IPR017877Myb-like domain
PROSITE profilePS500907.073482531IPR017877Myb-like domain
SMARTSM007171.1486533IPR001005SANT/Myb domain
SuperFamilySSF466896.17E-6487547IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-9489539IPR009057Homeodomain-like
PfamPF139213.2E-11490547No hitNo description
PROSITE profilePS500906.632533599IPR017877Myb-like domain
SMARTSM007174535601IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-6540600IPR009057Homeodomain-like
PROSITE profilePS500907.259601654IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MGKKMREKDG HKSENKQTEE VNSIEKEIDV LNGVPKSSNR DDDKNKIKDR TKKRKTEFDT  60
DKKESKNTHK KHKTNKDAVE EIPIETCLGG KENAEQESRK VMNLENNGEA KRVKKDKHKK  120
NRDETDAVAT VTETLKHSKK ESEKAHKKHE KSKDEVKEIS VENCLGGKKN TEQESSKAMN  180
LENKGEAKRV GKDKHKKDDK DGINAVGTVT GTLEHSKKES PKARKKKKDV VEEISMETCL  240
GGKENAEKES SKVVNLGNNG EAEKVGEDKH KRKNKVGIDA VATVTETIEH SKMQEPVETD  300
VCKKQKKKQK LEKVNGNVAD DIAAPSSTTD KKGTGRENSS GNELERKKLR DIGGDDEEGN  360
KRKKKKSKSV ENDTDQVENA TLKDNSKKVS FSDQVEVFPS MDDAKKDKQG LVKGKRFSKE  420
EDEIVMNAVA EYIESHNLGD EGLNMVLNCG SHKEVRRCWN EIQAAIPWRP VESVYNRAHV  480
LFERDEKRPW TPEEYEIVKK FVEQHGRNWR LLGDTLGKHR HHVKDTWRRI SANAKKGQWS  540
QDEYQKLFDL VNLDLCMKAT QERKSKYGML RDNICWTAIG NKMETRAFVS CCSKWYRNLT  600
SPMVAEGLWA DVDDYRMLDA LSSLDACCME DVNWDNILEH RSGDLCRKRW SQMVQRLGSN  660
KNLSFAEQVD ILAERYRPDM IEARETFDSK QPVDLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228RKKKKD
2345365RKKLRDIGGDDEEGNKRKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.210450.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716237.10.0PREDICTED: transcription termination factor 1-like
TrEMBLA0A1U8LNU70.0A0A1U8LNU7_GOSHI; transcription termination factor 1-like
STRINGGorai.013G268300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-123MYB_related family protein