PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1525
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 289aa    MW: 32601 Da    PI: 8.7874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1525genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12106157155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i    ++++k+L+
  Gh_A13G1525 106 QRMTHITVERNRRKQMNQYLSVLRSLMPPS---YAQRGDQASIIGGSINFVKELE 157
                  79****************************...9*****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.81E-11104161No hitNo description
SuperFamilySSF474596.15E-16105171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.869105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-13105161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-7111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAMEAVVFQQ DWFGYNGKDV LLGGNWSYGL GLGLGKEEEK FCFKHIPGNQ TSDTNNLVDG  60
DHRVSSSSQT SMAPPLPHSS GPSAVGRRKR RRSTKAPKNK EEIENQRMTH ITVERNRRKQ  120
MNQYLSVLRS LMPPSYAQRG DQASIIGGSI NFVKELEQRL QWLSGQKELK EERPKFDDFF  180
TSPQYSTPIG DIEVNVNETH ANLKIRWKRR PSLLFRLVSG LNAMRLTILH LNVTTAALIV  240
LYSLTLKVED DCKLTTVDGI ASAVNQLLCR IEDDDGDDAM FNSFNSILP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791RKRRR
28792RKRRRS
3106117RMTHITVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6177932e-56JX617793.1 Gossypium hirsutum clone NBRI_GE63038 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675495.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK914e-67BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A1U8IBB60.0A0A1U8IBB6_GOSHI; transcription factor bHLH94-like
STRINGGorai.013G204300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-68bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]