PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1330
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 761aa    MW: 81890.7 Da    PI: 6.2765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1330genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.7e-33272329260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  d++++ei+Y+g Hnh+k
  Gh_A13G1330 272 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-DGQITEIIYKGAHNHPK 329
                  7****************************************.***************85 PP
2WRKY101.64.5e-32490548159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver++++ k+v +tY g+Hnhe
  Gh_A13G1330 490 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHNLKCVLTTYDGKHNHE 548
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-29262330IPR003657WRKY domain
PROSITE profilePS5081123.548266330IPR003657WRKY domain
SuperFamilySSF1182904.05E-26267330IPR003657WRKY domain
SMARTSM007743.4E-37271329IPR003657WRKY domain
PfamPF031062.5E-25272328IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-35475550IPR003657WRKY domain
SuperFamilySSF1182901.31E-27483550IPR003657WRKY domain
PROSITE profilePS5081136.965485550IPR003657WRKY domain
SMARTSM007742.0E-36490549IPR003657WRKY domain
PfamPF031064.6E-24491548IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MDHNITVFTN RQESVTADDG NGESETVDHG CGGGDGDGGV DGGKSGVSIA ERRAATCGFK  60
VDKINTARFR ASTSPLASPP VRLPYLTIPP GISPTALLDS PIMLPNAQGS PTTGTFPVPT  120
LNQDGQVLSV SNTDRGSKIA PSFSFKPQSM DSQPSFSSLE DQVSSSLNLV QRAEVDYQPL  180
VHLGTPLDFE FPVEFSKEAT SRSFAADSVA EVKVLNNIVN DNVNLGCHPS ELAGDRMSMQ  240
KVPFNGQDVS TNLSESDPKG TNTTAGTART SEDGYNWRKY GQKQVKGSEY PRSYYKCTHP  300
NCQVKKKVER SLDGQITEII YKGAHNHPKP QPCRPSLGSS SSSNEMSESA EGNGTCVKVE  360
SGLIWKNTQA GSKDIKLGSD LRADGLERTS STSVITDLSD PLSTAQGKSV GVFESADTPE  420
FSSTLASNDD DNDDRATQGS ISLCDDAAND DESESKRRKT ESCSTEMNVA SGALREPRVV  480
VQIESEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSPG CPVRKHVERA SHNLKCVLTT  540
YDGKHNHEVP AARSSSHVNS SACNLPPTVP NSQAALALSR NSHVLKPETP IQDIAPPFDR  600
KPEFKNEYMR PSFLGDFSNE MKLGTASLAS VYQMKFPSLQ KAIPYGTFGL NPNCISTRSP  660
GSIASTVPNF PISMPLNLPT SANLSLAGFD INNGGKPAAP IHSFLPGQQF KENAARFHGI  720
KQELKDDNHY DPCLPIVDHA SATSSSSSSV YRQQATGNFP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34260551178Probable WRKY transcription factor 4
2lex_A5e-34260551178Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3311710.0AY331171.2 Theobroma cacao WRKY 11 (tcw11) gene, tcw11-1 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616814.10.0PREDICTED: WRKY transcription factor SUSIBA2-like
RefseqXP_017616815.10.0PREDICTED: WRKY transcription factor SUSIBA2-like
TrEMBLA0A0B0MNS20.0A0A0B0MNS2_GOSAR; Putative WRKY transcription factor 2-like protein
STRINGGorai.013G179400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17370611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-108WRKY DNA-binding protein 2