PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1138
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 571aa    MW: 61669 Da    PI: 6.6919
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1138genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.8e-32224281260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gh_A13G1138 224 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 281
                  8****************************************.***************85 PP
2WRKY106.51.4e-33388446159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+CtsagCpv+k++er+++dpk+v++tYeg+Hnh+
  Gh_A13G1138 388 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSAGCPVRKHIERASHDPKAVITTYEGKHNHD 446
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-27218282IPR003657WRKY domain
PROSITE profilePS5081123.525218282IPR003657WRKY domain
SuperFamilySSF1182904.05E-25220282IPR003657WRKY domain
SMARTSM007744.1E-34223281IPR003657WRKY domain
PfamPF031061.7E-24224280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37373448IPR003657WRKY domain
SuperFamilySSF1182904.71E-29380448IPR003657WRKY domain
PROSITE profilePS5081138.939383448IPR003657WRKY domain
SMARTSM007741.3E-38388447IPR003657WRKY domain
PfamPF031068.4E-26389446IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MEEQILASSS AAAAAAAASA SASATQHDLS ASAASSGARY KLVAPAKLPI SRSACITIPP  60
GLSPSSFLES PVLLSDVKAE PSPTTGSLIK PQAVHGSVNS STYSVTAACS NAFDERNPSC  120
FEFRPHPRSN LAPADLNHLR SEQSLQIQGQ YQTISYNSSA LVKSEMAGSS NELSLSVPFH  180
TATSVASASA EIDVDELNQS GNSNSGMLSG QTDHRVSGSS TISDDGYNWR KYGQKHVKGS  240
EFPRSYYKCT HPNCEVKKLF ERSHDGQITE IIYKGTHDHP KPQPSRRYSS GNTMSVQEER  300
FDKVPPLTGR DDKSSNMYGQ MAHSIEPNNT ADSSPVTAND DNVDDVDDDD PFSKRSRKMD  360
GGIDIIPVVK PIREPRVVVQ TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTSAGCP  420
VRKHIERASH DPKAVITTYE GKHNHDVPTA KTSSHDIAGP VTVNALSRIR SEENDAISLD  480
LGVGISPAPE NSSNEHQQLH SEVVQSHHQT GGSSFKLHQV TPMTAYYGVP NGGMNQYGSR  540
EAPSEGLTVD ITPLNHSYAY SQTMGRILTG P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37209448377Probable WRKY transcription factor 4
2lex_A3e-37209448377Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.76450.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697620.0KF669762.1 Gossypium hirsutum WRKY transcription factor 14 (WRKY14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619835.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0B0PWR60.0A0A0B0PWR6_GOSAR; Putative WRKY transcription factor 20-like protein
STRINGGorai.013G155500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein