PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G0715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 310aa MW: 33646.1 Da PI: 6.6261 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.6 | 5.5e-33 | 169 | 226 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ Gh_A13G0715 169 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 226 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-34 | 153 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-28 | 160 | 226 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.689 | 163 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-38 | 168 | 227 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 169 | 226 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEDKEGLDPA GTEFKSDSSS SWTLAGPDSV SDSINYFFDR ESSILSEFGW NILQPDHADE 60 IERFGELDRT DASRGLAGNC SGSQSQSCGA AGGVGDSCSG AASNPVGSAE VPTSNPSVSS 120 SSSEDPPEKS TGFGGKPPEI PSKVRKKGQK RIRQPRFAFM TKSEVDHLED GYRWRKYGQK 180 AVKNSPFPRS YYRCTNSKCT VKKRVERSSE DPTIVITTYE GQHCHHSVGF PRGGLISHEA 240 AFAGQFTPGV SQFYYSQGVQ LHRGISPSTT QSQQLPIEVR ESRALPEPTS QLPKDEGLLG 300 DIVPPGMRKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 159 | 225 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 159 | 225 | 8 | 74 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438480 | 0.0 | KM438480.1 Gossypium aridum WRKY117 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016674216.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 6e-78 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | A0A1U8I7M9 | 0.0 | A0A1U8I7M9_GOSHI; probable WRKY transcription factor 57 | ||||
STRING | Gorai.013G092300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4995 | 27 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-70 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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