PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0350
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 506aa    MW: 57372.6 Da    PI: 8.6469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0350genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.4e-20352401255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  Gh_A13G0350 352 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEEAARAYDKAAIDFRG 401
                  59*******.**********82....48**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007243.7E-2165260IPR006634TRAM/LAG1/CLN8 homology domain
PfamPF037985.2E-2966193IPR006634TRAM/LAG1/CLN8 homology domain
CDDcd000181.75E-33351409No hitNo description
Gene3DG3DSA:3.30.730.102.4E-32352409IPR001471AP2/ERF domain
PROSITE profilePS5103225.211352409IPR001471AP2/ERF domain
SMARTSM003801.3E-37352415IPR001471AP2/ERF domain
PfamPF008477.0E-14352401IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22352410IPR016177DNA-binding domain
PRINTSPR003671.1E-11353364IPR001471AP2/ERF domain
PRINTSPR003671.1E-11375391IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MESSIWSRNA KPDVCHFLVA VHFALGFVVA RFFLDKFIFR RLAIWLLSNG YAPLKINEAT  60
QAKIAKCSES MWKLAYYATV ETYILKITYY EPWFTDTKQY FRGWPDQELK LSLSLFYMCQ  120
CGFYIYSIAA LLTWETRRKD FAVMMSHHVI TVILIGYSYI TSFFRIGSII LALHDASDVF  180
LEAAKVFKYS ERELGAKEKE NLKKRSQILK GQISVQVPTK LMQKPMKRQR LTPVPPPSVH  240
RLSPEYEISI MVAALKNVVA GYTPTSTSAV SVSAVDIPSD FVSLVTSTVS TAGISRDFDD  300
ALFQANEVTD RCHVCRFDGC LGCNLFPPSH QEDQTVTTTA TTMFSKPKRV KNYRGVRQRP  360
WGKWAAEIRD PRRAARVWLG TFNTAEEAAR AYDKAAIDFR GPRAKLNFPF PDSTHSDGYV  420
TTSAAAAPTT TTTTSVVVFD QENSGAFNLN IGKESEMRIG SEFWDGMGED EIQEWMKMMT  480
TDFDWDNNNK KYFSDSAMTM GNASSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23351410464ATERF1
3gcc_A2e-23351410464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.104840.0boll| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0801740.0JQ080174.1 Gossypium hirsutum longevity assurance protein 1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675013.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1U8IF780.0A0A1U8IF78_GOSHI; ethylene-responsive transcription factor ERF109-like
STRINGGorai.013G043700.11e-176(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-35redox responsive transcription factor 1