PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A13G0192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 30081.9 Da PI: 9.1664 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 1e-05 | 165 | 204 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A YIk Lq Gh_A13G0192 165 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 204 7999**************99.....9****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.734 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.05E-4 | 165 | 208 | No hit | No description |
SuperFamily | SSF47459 | 1.2E-10 | 165 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MRKAAHLSPL SSQFYNIGNT EAQMPYLDVL MQMESKGNVN GDAFSMEPKI FYNDNQIRDG 60 AFAIPYQSHF NSNFLQDFEY GSSNFDNNFQ QSMSLSSKLA IPYLESESIQ NGRKREIEFN 120 NDPNTALDER NKNKRKKLLT SFEQSHRSSQ EITEIKDFRL NMPVRRSQKL SDKITALQKL 180 VSPYGKTDTA SVLQEASLYI KLLQEQIQML SSSYKSLRAI HPQEIGKKQQ DLKSRGLCLV 240 PISFTQRVTK EEQSSLENLN NV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19370 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618634.1 | 0.0 | PREDICTED: transcription factor bHLH114-like isoform X2 | ||||
TrEMBL | A0A0B0MUS5 | 0.0 | A0A0B0MUS5_GOSAR; Transcription factor protein | ||||
STRING | Gorai.013G023000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17246 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 5e-22 | bHLH family protein |