PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2671
Common NameWRKY61
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 300aa    MW: 34026.1 Da    PI: 5.7786
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2671genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30132189258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                  +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers +dp+v++itY+ eHnh
  Gh_A12G2671 132 SDIWSWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSCSDPRVFIITYTAEHNH 189
                  69*************************998**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-30117192IPR003657WRKY domain
PROSITE profilePS5081133.499126192IPR003657WRKY domain
SuperFamilySSF1182904.71E-26127192IPR003657WRKY domain
SMARTSM007748.9E-35131191IPR003657WRKY domain
PfamPF031061.6E-25133189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEHWDWQAVT GETCSNNDAF ISYMENPEFS FGPLSFQHGD EDHLMSFPKV FEPNPNVLDE  60
LMEELYKPFC PELNPYTIPV LEDHAEEPEC QKQQPLVVSG TNKDSTKPKR SSRKKQQHRL  120
VKHVTGDAGL QSDIWSWRKY GQKPIKGSPY PRSYYRCSSS KGCLARKQVE RSCSDPRVFI  180
ITYTAEHNHG HPTRRNSLAG STRNKSLTVA KPKNLAYKNE PHEVAESTVL SPAVIKDESV  240
KQESITMEGG KILTPDVMLS DELVESFEGF GDLFVDQFPD LSHELWFMNE SATLTGGLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-181241921077Probable WRKY transcription factor 4
2ayd_A2e-18119192274WRKY transcription factor 1
2lex_A3e-181241921077Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697900.0KF669790.1 Gossypium hirsutum WRKY transcription factor 61 (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314486.10.0WRKY transcription factor 22-like
TrEMBLA0A1U8NL330.0A0A1U8NL33_GOSHI; WRKY transcription factor 22-like isoform X1
STRINGGorai.008G250300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-45WRKY family protein
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]