PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G2639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 308aa MW: 34845.6 Da PI: 4.4966 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k Gh_A12G2639 92 KKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWK 145 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.4 | 6.3e-41 | 91 | 183 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ +qv++LE+sFe+e+kLep+rKv+la++Lglq rqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+++L+ee+ + Gh_A12G2639 91 EKKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWKTKQLEKDYDSLQASYNSLKADYDNLVKETDKLKEEVVQ 183 69**************************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.329 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.4E-18 | 90 | 151 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.48E-18 | 91 | 157 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.97E-17 | 92 | 148 | No hit | No description |
Pfam | PF00046 | 1.4E-16 | 92 | 145 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-20 | 94 | 155 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.8E-6 | 118 | 127 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.8E-6 | 127 | 143 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.6E-15 | 147 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MAGGRVYRSN TSADAGSNNL SVLLQSQWVP SSSEPLDTLF IPGSSPSSFL VSGTRSMVSF 60 EGVDRRRSYF RTFDEEEKVE EDIEEYLHRS EKKRRLTVDQ VQFLEKSFEA ENKLEPDRKV 120 QLAKDLGLQS RQVAIWFQNR RARWKTKQLE KDYDSLQASY NSLKADYDNL VKETDKLKEE 180 VVQLTDKLLL EGKEKGKSEL PDAKTSSQEL PSEAAEGEES KVVPVMKSDY TEGVHSSVLL 240 EGAGSSYPFE PDQSDLSQDE EDNLSKGLLH LPSCVFPKLQ DIDYSDPPAG SCNFGFPLDD 300 HAFWSWAY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635448.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
Swissprot | Q02283 | 5e-46 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1U8NBC1 | 0.0 | A0A1U8NBC1_GOSHI; homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
STRING | Gorai.008G190300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-45 | homeobox 1 |
Publications ? help Back to Top | |||
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