PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2597
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 206aa    MW: 22315.3 Da    PI: 7.662
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2597genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.92e-39101101100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+k+Cv+apyf ++q +++fa+vhk+FGasn  kll+ +p ++r da+ +l+yeA ar+rdPvyG++g+i++lqqq+ +l+aela++
  Gh_A12G2597  10 PCGACKFLRRKCVKGCVFAPYFDSDQgTAHFAAVHKVFGASNAAKLLQGTPVHKRVDAVFTLCYEALARVRDPVYGCAGHIFTLQQQVVNLQAELAYI 107
                  7***********************9989********************************************************************99 PP

       DUF260  98 kee 100
                  +++
  Gh_A12G2597 108 QAR 110
                  875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7819111IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3810108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRAANNGTGP CGACKFLRRK CVKGCVFAPY FDSDQGTAHF AAVHKVFGAS NAAKLLQGTP  60
VHKRVDAVFT LCYEALARVR DPVYGCAGHI FTLQQQVVNL QAELAYIQAR LSTLQCLSLV  120
LPQSQAECRS TTTFHSASEL GSDLACSSDT SMNVFDLPQP QQTSIELAGS PNPFNRVTED  180
EDLQALAREF VSQCHPGLRF RPSTSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-361011911119LOB family transfactor Ramosa2.1
5ly0_B5e-361011911119LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6154424e-60JX615442.1 Gossypium hirsutum clone NBRI_GE59429 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613527.11e-151PREDICTED: LOB domain-containing protein 19-like
SwissprotO813226e-65LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2P5W5T81e-150A0A2P5W5T8_GOSBA; Uncharacterized protein
STRINGGorai.008G114300.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-67LOB domain-containing protein 31