PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2465

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 470aa MW: 52227.4 Da PI: 7.4628

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2465	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++G g W+ I +++g ++t+ q++s+ qk+ Gh_A12G2465 59 REKWTEEEHQKFLEALRLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103 789*****************.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-16	53	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.551	54	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-9	56	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-16	57	106	IPR006447	Myb domain, plants
SMART	SM00717	4.5E-13	58	106	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-14	59	102	IPR001005	SANT/Myb domain
CDD	cd00167	3.79E-11	61	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MATEDQIEST ASPTALKSGL CCSIGSGQSE TLTQLQELYG FKHDHTPKVR KPYTITKQRE 60 KWTEEEHQKF LEALRLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVARE SNDGFESSVK 120 SIEIPPPRPK RKPTHPYPRK SVTAVKGISP LSQLERSLSP NHSVSEQDNK SPSSVLSPFV 180 FDAMGSSASE QPNRCSSPTS CTTNIQSLNN TSPVEKENDY VTSIEKENES LSSAKVFGQS 240 SEEDILSLKS NADFEEPVCT KGNEAAVVVP FTSIKLFGKT VEVKDSSKPS TGAENFQMQT 300 LKNGVAGECL DLHLSHGTVI DNCSRVPSKS NLSPCMEIHT DKNDHVEYTS DAPLPWLAFY 360 QGLPFYYITS FNQTHKDPRV KETPKEKETL NERSCTGSNT GSVSQIENME KNSDSVDSQC 420 QNPCPRGKMT SQKFSKGFVP YKRCLTERDM PSSMVVSEGR ERAQKARVCS

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MATEDQIEST ASPTALKSGL CCSIGSGQSE TLTQLQELYG FKHDHTPKVR KPYTITKQRE  60
KWTEEEHQKF LEALRLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVARE SNDGFESSVK  120
SIEIPPPRPK RKPTHPYPRK SVTAVKGISP LSQLERSLSP NHSVSEQDNK SPSSVLSPFV  180
FDAMGSSASE QPNRCSSPTS CTTNIQSLNN TSPVEKENDY VTSIEKENES LSSAKVFGQS  240
SEEDILSLKS NADFEEPVCT KGNEAAVVVP FTSIKLFGKT VEVKDSSKPS TGAENFQMQT  300
LKNGVAGECL DLHLSHGTVI DNCSRVPSKS NLSPCMEIHT DKNDHVEYTS DAPLPWLAFY  360
QGLPFYYITS FNQTHKDPRV KETPKEKETL NERSCTGSNT GSVSQIENME KNSDSVDSQC  420
QNPCPRGKMT SQKFSKGFVP YKRCLTERDM PSSMVVSEGR ERAQKARVCS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016686722.1	0.0	PREDICTED: protein REVEILLE 7-like
TrEMBL	A0A1U8J8Q8	0.0	A0A1U8J8Q8_GOSHI; protein REVEILLE 7-like
STRING	Gorai.008G293600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9174	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	2e-54	MYB_related family protein