PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G2429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WOX | ||||||||
Protein Properties | Length: 364aa MW: 41836.4 Da PI: 6.7882 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.6 | 7.7e-22 | 69 | 128 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ Gh_A12G2429 69 SRWNPTPEQLRTLEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 128 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.8 | 2.1e-37 | 68 | 130 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Gh_A12G2429 68 SSRWNPTPEQLRTLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 130 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.7E-5 | 66 | 133 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-9 | 69 | 128 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.7E-19 | 69 | 128 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-12 | 69 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.00E-6 | 70 | 130 | No hit | No description |
PROSITE profile | PS50071 | 11.013 | 74 | 129 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MWMMGYNDGG AEFNMPDSFN GRKLRPLIPR PNNNSPCLSR INGSDFFALS MGDQNKREFN 60 TQPAVVVSSR WNPTPEQLRT LEELYRRGTR TPSADQIQHI TAQLRRYGKI EGKNVFYWFQ 120 NHKARERQKR RRQMESTQDD HPDNFERKDS ETNRTGYEVE QTKNWALPIN CSTLAEESVS 180 IQMAAKAAVS ECRADGWIQF EEGELQQRKN FVERNDTWQH KMQFSYSCLS PVLSPNPTST 240 TAAISTVTTV APPPPIRPMD PKHQYQHQQL FKTHHGLNNI FKSPCRYNNN NTNVFDFNFV 300 RNQEATLGED DSQTLQLFPL HSCNDDGSDD SNEKENEISI ATAPGNANLG GPNYQFFEFL 360 PLKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016718227.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 1-like | ||||
TrEMBL | A0A0B0P6I0 | 0.0 | A0A0B0P6I0_GOSAR; WUSCHEL-related homeobox 1-like protein | ||||
TrEMBL | A0A1U8LUM1 | 0.0 | A0A1U8LUM1_GOSHI; WUSCHEL-related homeobox 1-like | ||||
STRING | Gorai.008G289800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7397 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 2e-62 | WUSCHEL related homeobox 1 |