PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G2416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 20956 Da PI: 4.4226 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42 | 2.3e-13 | 4 | 47 | 4 | 51 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51 kGVr ++ +g+++AeIrd + + kr +lg+f+t++eAa + + ++ Gh_A12G2416 4 KGVRKRP-WGKFAAEIRDpF-----TkKRLWLGTFDTEKEAAVVYNKKKR 47 8******.**********66.....34**********9999988877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.977 | 2 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-7 | 3 | 14 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-19 | 4 | 50 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-14 | 4 | 49 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.40E-20 | 4 | 43 | No hit | No description |
Pfam | PF00847 | 3.2E-7 | 4 | 39 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-12 | 4 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-7 | 25 | 41 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MAAKGVRKRP WGKFAAEIRD PFTKKRLWLG TFDTEKEAAV VYNKKKREFQ IMAAVAEDEL 60 YCRRSPSSVL DVCVGKVEDE TDMKRHVVKK VVKESKIIEP CKRTIEEDEV YVNAVWDDVG 120 SVMELSWEPP PPLWDEELLG PCCLQDTVDY ELTLPENLPE IEIDFVQDMA WVDELFNVES 180 K |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016718273.1 | 1e-129 | PREDICTED: ethylene-responsive transcription factor ERF117-like | ||||
Refseq | XP_017636044.1 | 1e-129 | PREDICTED: ethylene-responsive transcription factor ERF117-like | ||||
TrEMBL | A0A2P5WWD2 | 1e-129 | A0A2P5WWD2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G286700.1 | 1e-117 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20720 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49120.1 | 7e-19 | ERF family protein |