PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2377

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 205aa MW: 22752.8 Da PI: 5.5953

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2377	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.6e-07	60	105	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr llP ++ Av YIk+Lq Gh_A12G2377 60 KKLMHRDVERQRRQEMATLYASLRNLLPLE---YQD------HMNGAVMYIKYLQ 105 5789************************96...444......4447777777777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-11	58	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.58E-8	58	109	No hit	No description
PROSITE profile	PS50888	9.166	59	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-5	60	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-7	60	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MDELFLFQFP SIPNPQNETP QDKVLDYVVP MDGSGNTHLY SSMGSGAAGN DDDDDNVEKK 60 KLMHRDVERQ RRQEMATLYA SLRNLLPLEY QDHMNGAVMY IKYLQKRVSE LSYKRDELKK 120 VLNSTGFDHG MSYDGAVLST AVVHQSLDGG VELVISTGFG ARALTLSRVL KLLVQEGLDV 180 VSCVSTRING GLVHTIQSEV GRLMG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX618280	1e-142	JX618280.1 Gossypium hirsutum clone NBRI_GE63693 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435765.1	1e-130	PREDICTED: transcription factor bHLH120-like isoform X1
Swissprot	Q9STJ6	4e-32	BH126_ARATH; Transcription factor bHLH126
TrEMBL	A0A0D2Q3D9	1e-128	A0A0D2Q3D9_GOSRA; Uncharacterized protein
STRING	Gorai.008G282300.1	1e-129	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	7e-33	bHLH family protein