PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2362
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 444aa    MW: 48486.8 Da    PI: 8.0037
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2362genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08113134426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C+++ + G C +Gd+C+F H+
  Gh_A12G2362 113 KVCNYWVQ-GNCTFGDKCRFLHS 134
                  68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.842248IPR000571Zinc finger, CCCH-type
SMARTSM003561.12347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7110134IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6111135IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-6112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-7113130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.7E-9131243IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.19E-35132217IPR017986WD40-repeat-containing domain
SMARTSM003201.3140179IPR001680WD40 repeat
PROSITE profilePS5029410.812147188IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.344147188IPR001680WD40 repeat
PRINTSPR003201.5E-5166180IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780166180IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.102.3E-24265437IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.19E-35271437IPR017986WD40-repeat-containing domain
SMARTSM003202.1E-4273310IPR001680WD40 repeat
PfamPF004000.034277310IPR001680WD40 repeat
PROSITE profilePS5029415.9280359IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.745280319IPR001680WD40 repeat
PRINTSPR003201.5E-5297311IPR020472G-protein beta WD-40 repeat
SMARTSM003200.001313350IPR001680WD40 repeat
PfamPF004000.0049315349IPR001680WD40 repeat
PRINTSPR003201.5E-5337351IPR020472G-protein beta WD-40 repeat
SMARTSM0032053354397IPR001680WD40 repeat
SMARTSM00320100400436IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDLDGGAGNN KRVFNRHGTD SSKNQKVCFH WRAGKCTRFP CSFLHSEPSH PSGSAAAASS  60
SSTANGSGAP KRFADDSRFS GSAQRRGPNF KNNHNNSWGR MGANNKVVRK TEKVCNYWVQ  120
GNCTFGDKCR FLHSWSLGEG FSMLNHLDGH QKLLSGIVLP AGMDKLFTGS KDETLRAWDA  180
NSGQCTGVIN LGGEVGCMIS EGLWLFVGIP NAVKAWNTQT NQEFSLSGPA GQVYAMIVGN  240
GLLFAGTQGQ SPSIIGFLQE GILAWKFNAV TNSFEPAASL KGHTLPVVSL MVGANRLYSG  300
SMDHSIKVWS LETLQCLQTL TEHTNVVMSL LCWDQFLLSC SLDQTIKVWV ASENGNLEVT  360
YTHNEEHGLL NLRGMHDLES KPVLLCACND NYVRLYDLPS FSERGRIFAK QEIRAIEVGP  420
SGLFFTGDGT GFKVWKWAEP VATT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-151354358323Tako8
6g6n_A3e-151354358323Tako8
6g6n_B3e-151354358323Tako8
6g6n_C3e-151354358323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.213480.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145871e-145JX614587.1 Gossypium hirsutum clone NBRI_GE58084 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637580.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1
RefseqXP_017637581.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0D2TE790.0A0A0D2TE79_GOSRA; Uncharacterized protein
STRINGGorai.008G281100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein