PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2292
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 398aa    MW: 42618.4 Da    PI: 5.554
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2292genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30190249260
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ d ++++itY+geH+h+k
  Gh_A12G2292 190 SDPWAWRKYGQKPIKGSPYPRNYYRCSSSkGCSARKQVERSNLDSDIFIITYTGEHTHPK 249
                  699************************998****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-30175250IPR003657WRKY domain
PROSITE profilePS5081132.237184250IPR003657WRKY domain
SuperFamilySSF1182905.1E-26185250IPR003657WRKY domain
SMARTSM007749.7E-37189249IPR003657WRKY domain
PfamPF031061.3E-25191248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAEDWDLYAV VRSCTSAANT TRAVENNNNE NCSSSFEDPL ACLASLTFEE DDDPFPFPNL  60
SQLAETGQLQ DSYKPFLPNA DPIAAAAAAA IDPCSSSSHH GGSSSQLHQH QRLQHQQEQP  120
AASGIGSPLT PTSTPLFTFA GFGNQQQVQP RSHQQQQTRA QPPVQTPRSR KRKNQQKRTV  180
CHVTADKLSS DPWAWRKYGQ KPIKGSPYPR NYYRCSSSKG CSARKQVERS NLDSDIFIIT  240
YTGEHTHPKP THRNSLAGST RNKLSTVQKP TTTKDSAAET IPTTSTVSCS SPRSTTSLSP  300
ISPTTTLSAP EDTAAAVHKT GDNGGEEESV YMDVESDEGD DDLLIPDVHV DEDLFKGLEE  360
LVGSGSNGVG IGPTFGDNFS SWSTGNSAAA GAAASGGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-191912511880Disease resistance protein RRS1
5w3x_D5e-191912511880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697880.0KF669788.1 Gossypium hirsutum WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636521.10.0PREDICTED: probable WRKY transcription factor 27
SwissprotQ9FLX88e-62WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A0A7E9U10.0A0A0A7E9U1_GOSAI; WRKY113
STRINGGorai.008G273700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.16e-59WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]