PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G2247

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 218aa MW: 24340.9 Da PI: 6.3036

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2247	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	33	92	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++l+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss Gh_A12G2247 33 EANLNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTHGGSLRNVPVGGGSRKNKTSS 92 56799****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	23	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-34	35	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.189	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEATQWEEGI GVTKPMAIGG YSRSSGRVQK GSEANLNCPR CNSTNTKFCY YNNYSLSQPR 60 YFCKTCRRYW THGGSLRNVP VGGGSRKNKT SSSKKLDDDH LIHQNPKIHE GDHHQVINLA 120 YPPVVPAEAY NSSQRLPFMP EIGDANTGIY SSGFPVLDPG LKFSSDGFGT GYDENHQGVE 180 ENGERLLFPV MEESKQVPMN TMNELEEDKE QGESTGHW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21826	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016716464.1	1e-165	PREDICTED: dof zinc finger protein DOF3.7-like
TrEMBL	A0A1U8LTB8	1e-164	A0A1U8LTB8_GOSHI; dof zinc finger protein DOF3.7-like
STRING	Gorai.008G267000.1	1e-152	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19643	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	6e-38	Dof family protein