PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1670
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 1537aa    MW: 172677 Da    PI: 7.0076
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1670genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY833e-26630688159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+W K GqK+vkg+++prsYYrC s+ C +kk ver+ +d++++++tY+g Hnh+
  Gh_A12G1670 630 LDDGYRWGKLGQKMVKGNPYPRSYYRCLSTCCLAKKYVERDPQDTSFFVTTYHGLHNHD 688
                  59********************************************************7 PP
2WRKY70.81.9e-22824884259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDg++WrK GqK++ g+++prs++rCt++   gC ++k v+r ++dp+v+eitY  +H+++
  Gh_A12G1670 824 DDGFCWRKDGQKDILGAKYPRSFFRCTYRhiqGCLATKIVQRLDDDPTVFEITYCRKHTCN 884
                  8***************************99999**************************96 PP
3WRKY50.63.9e-1613041359259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                    D y+W+ YG K   g++  +s+Y C+++gC++kk ve+s  d+k +++ Y+ +Hnh+
  Gh_A12G1670 1304 ADAYTWKCYGTKGLIGNR-RKSFYNCAHPGCRAKKSVEKSL-DGKSFIVLYRASHNHP 1359
                   69**************97.58********************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520582.38E-2517145IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138551.8E-71767IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.104.5E-1719155IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369193154IPR003591Leucine-rich repeat, typical subtype
SMARTSM003692.378101IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:3.80.10.104.5E-17306373IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.38E-25325438IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.801.8E-24623688IPR003657WRKY domain
PROSITE profilePS5081127.003625690IPR003657WRKY domain
SuperFamilySSF1182901.57E-22626688IPR003657WRKY domain
SMARTSM007744.3E-28630689IPR003657WRKY domain
PfamPF031062.9E-20631688IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-20821884IPR003657WRKY domain
SuperFamilySSF1182901.57E-20822885IPR003657WRKY domain
SMARTSM007741.7E-31823885IPR003657WRKY domain
PROSITE profilePS5081118.246824886IPR003657WRKY domain
PfamPF031064.0E-20824883IPR003657WRKY domain
PfamPF078875.2E-5010021143IPR012416CALMODULIN-BINDING PROTEIN60
PROSITE profilePS5081114.06812981361IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-1412991359IPR003657WRKY domain
SuperFamilySSF1182904.05E-1213011359IPR003657WRKY domain
SMARTSM007741.0E-913031360IPR003657WRKY domain
PfamPF031062.7E-1113051359IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1537 aa     Download sequence    Send to blast
MLTSVTKASG PGLAEGNYEL TAIPPLFFQR MQLLQILDLS RTSIKSLPKS LPKLVALKTL  60
LLQGCDLFIE LSPQVGKLKN LEQLDLDETQ IMDLPRETGK LLKLRQLKVS FYHLCGKKKL  120
KSNILIHPQT ISNLSQLAEL SIDVNPADKR WDDSVEAVLK EVCSSKTLRT LSLYLPTFQL  180
LDDASLIYPS LSRFRFTVGH HKRRIISRVP HEVEAEFRKW DKCLRFVNGE NIPIQIKAVL  240
KYSNSFFLDH HTTAMNLSEF GIENMKGLKF CLLAECNKME SLIDGEMHYG RNEDDQSESD  300
PGSVQHMLES LEYLSIYYME DLQCIWRGAD SFVCMSKLKF LALHACPQLS KIFSLTLLEN  360
FINLEEIILE DCPRVISLVS HASVKPIMSD KIFLPSLKRL LLLYLPELVS ISNGLLIAPK  420
LESIGCYNCP KLKSISKMEL SSKTLKIIKG ECEWWEGMDW NETEWRDGPG YLMHIFSPID  480
NQKDVMTQMV EGRDPHEATI QNEDQQLGDQ KPLEVSTQDH RGKCLDYTEE RMMGTDVKEP  540
PSGCVFPSNP LCMTSHAPEQ ARSFTSGNNK SLEDDECFLV PNIVEVYVDE DEPKAKRWNC  600
TENENMGVIG SASNTTRGNR AANQIRSKVL DDGYRWGKLG QKMVKGNPYP RSYYRCLSTC  660
CLAKKYVERD PQDTSFFVTT YHGLHNHDEW NSRGLSKLHS QPCIDHRANN VKDAAEAAKS  720
ICPTKEYGDV FQASIQNEGA HPGIPEASIQ DESQQSVGVD PQPSALEIIV SESTESTPLP  780
LTGSPLSGDF DRYFKEQYQL HLDASKKSET RQVGVRPGTD LAPDDGFCWR KDGQKDILGA  840
KYPRSFFRCT YRHIQGCLAT KIVQRLDDDP TVFEITYCRK HTCNLASNVM PPTAPSRNQE  900
HGTRIEPQQQ HSQLPEENQK QQSQDLLVLP STPGQCVEQS LNHKSNSGND QKTISQEDNN  960
YTIVCQASSP SPSDSSTMIP QLSAAALSIA QLQARGFEEP AKQNQLYKKH YPPMLGDEVW  1020
RLDRIGKNGI IHVRLASEGI NTVQDFLRMS VVSPGELRRI LGPRMSERMW DNAIKHARTC  1080
VMGNKYYVFR GSNYRILLNP ICQLMGAEIN GSIYPTHTLS NIDTVYLEKL VRQAYVNWSS  1140
LEEIEGISNE IIALLTQDIM AQRTGANVMN TIPSNLPAMP PPGPWLAELP DHPVLMDNSN  1200
VLSSPTTGEC AVQSLNQKNN SGNDRQTISQ EDNNSTIVCH APPPSHSNSS AIISELSATT  1260
LPIAQVQAQS FEELAERNQS KGNLQLKACC YKQDSNLTKS GKAADAYTWK CYGTKGLIGN  1320
RRKSFYNCAH PGCRAKKSVE KSLDGKSFIV LYRASHNHPE SLPTRTSSLS ACSHIRASNH  1380
LTIKIPDKSF VTYEGGQMDM VGSVFFMRSA EDETELQTLM DKKFDQPSDG HKATVGAGVR  1440
KAKKRKRAKT NTFKLSSVTN FREMVESFTG KHTNKVQEEN LMRGIPRKKA WDANLKEISG  1500
NDIHCVWQNV DGPYEPDGTS QSEIIQADHP IIRCIPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-206296881675Probable WRKY transcription factor 4
2lex_A6e-206296881675Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114411447AKKRKRA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431140.0AC243114.1 Gossypium raimondii clone GR__Ba0041F12-jfm, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741639.10.0PREDICTED: uncharacterized protein LOC107951200 isoform X3
TrEMBLA0A1U8NUI30.0A0A1U8NUI3_GOSHI; uncharacterized protein LOC107951200 isoform X3
STRINGGorai.008G201000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1975946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.14e-27WRKY DNA-binding protein 30