PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1523
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 92aa    MW: 10344.7 Da    PI: 10.1049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1523genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-0820591554
                 HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +i +  ++L++l+P++ + +s K+s + +L+++++YI+sL
  Gh_A12G1523 20 QIIDLVSKLQQLIPELRGRRSDKVSASKVLQETCNYIRSL 59
                 5667779********88*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.442559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-81973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-62059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-82076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRSRQ SGASRITDDQ IIDLVSKLQQ LIPELRGRRS DKVSASKVLQ ETCNYIRSLH  60
REVDGLSDRL SQLLASTDTD SDQAAIIRSL LM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704509.12e-57PREDICTED: transcription factor PRE6-like
RefseqXP_017636815.12e-57PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX11e-40PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8KUV46e-56A0A1U8KUV4_GOSHI; transcription factor PRE6-like
TrEMBLA0A2P5Q5S46e-56A0A2P5Q5S4_GOSBA; Uncharacterized protein
STRINGGorai.008G181800.14e-56(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-39bHLH family protein