PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1488
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 307aa    MW: 33317.8 Da    PI: 6.509
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1488genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.6e-33165222259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp +v++tYeg+H h+
  Gh_A12G1488 165 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPAIVITTYEGQHCHH 222
                  8******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-33149222IPR003657WRKY domain
SuperFamilySSF1182903.92E-28156222IPR003657WRKY domain
PROSITE profilePS5081129.585159224IPR003657WRKY domain
SMARTSM007743.1E-38164223IPR003657WRKY domain
PfamPF031068.7E-26165222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEKEGGKPG TAFTSESSWT FSGPDSVSSS VNYFFDRDSN ILSEFGWDLQ PDHADDFGRF  60
AELDRTDSAR PELAGNLSAS QSCAAADLVV RCSVSGTASN PGGSADVSTS NPSVSSSSSE  120
DLPEKSTGSG GKPPEIPSKV RKKGQKQIRQ PRFAFMTKSE IDHLEDGYRW RKYGQKAVKN  180
SPFPRSYYRC TNSKCTVKKR VERSSEDPAI VITTYEGQHC HHGIAFPRGG LICHEAAFAG  240
QLTPPVSQIY HPGVQSHRQM PPSITQSQPH QAPVDVGEPH PEPEPTSQLP TDEGLLGDIV  300
PPGMRGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25154221774Probable WRKY transcription factor 4
2lex_A2e-25154221774Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.67791e-165leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO310729231e-165
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698440.0KF669844.1 Gossypium hirsutum WRKY transcription factor 67 (WRKY67) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703893.10.0PREDICTED: probable WRKY transcription factor 57
SwissprotQ9C9831e-74WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A1U8KSC20.0A0A1U8KSC2_GOSHI; probable WRKY transcription factor 57
STRINGGorai.008G178100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49952753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-68WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]