PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1304
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 309aa    MW: 34390.6 Da    PI: 8.0375
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1304genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.75.3e-15230255126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ +++tG C+yGd C+FaHg
  Gh_A12G1304 230 FKTELCNKWQETGACPYGDHCQFAHG 255
                  79***********************8 PP
2zf-CCCH18.73.1e-06268292125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  ykte Cr  +++  C+yG rC+F H
  Gh_A12G1304 268 YKTEVCRMVLAGDVCPYGHRCHFRH 292
                  9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-19224262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-11226261IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-9229256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286229257IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-12230255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-12263296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-8263298IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821267295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQNDNFATVY GDLAAKQSKD HQSDGVFSSS TTSSSTSAAS VFALYHPRIL MQQHQDMINR  60
HNLCLTRLRE AAKEAEALRQ ENTSLRSANR DLNKQLSALI QVSVQNHFSS SDYNTTPFEL  120
VNALRGLCLG SGGGGEVDVS DESPTSVMEG GAVDVERVML PKSISVRSNG YLKMMNQAGA  180
SHRGKTRGPT RTGNTSQLSG AVNVQQKVYV QGGKKEEEPL ELEVYNQGMF KTELCNKWQE  240
TGACPYGDHC QFAHGIEELR PVIRHPRYKT EVCRMVLAGD VCPYGHRCHF RHALTEQEKF  300
MDHLKPRNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22230296470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5774601e-121JX577460.1 Gossypium hirsutum clone NBRI_GE9285 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725551.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
RefseqXP_016735924.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform X1
RefseqXP_016735925.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform X1
SwissprotQ9C9F57e-92C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A1U8MFC90.0A0A1U8MFC9_GOSHI; zinc finger CCCH domain-containing protein 15-like isoform X1
STRINGGorai.008G157500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-74C3H family protein