PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1124
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 265aa    MW: 30085.5 Da    PI: 6.4341
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1124genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.19.9e-3071128359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY+++Hnh+
  Gh_A12G1124  71 DSWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCKTDASMLIITYTSSHNHP 128
                  99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-3164129IPR003657WRKY domain
SuperFamilySSF1182903.4E-2567129IPR003657WRKY domain
SMARTSM007743.9E-3569129IPR003657WRKY domain
PfamPF031066.6E-2571128IPR003657WRKY domain
PROSITE profilePS5081129.88471130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDGSISPKQN ETQASKRRFL FYINTELVHS RQHAFNFGHV FITRKVVERT VVTVKIGENG  60
GKLKNDGPPY DSWSWRKYGQ KPIKGSPYPR GYYKCSTSKG CSAKKQVERC KTDASMLIIT  120
YTSSHNHPSS HLHNTKTLSQ SPTKEPQSSD DDDDGDNDDQ APTTKQEHLP DKDEEYFHYL  180
QSPLSFPQNK EDPFSGNLER STVGLLLDEE PVSCCSHMKV AAASPIPKSE ENDFFDELEE  240
LPICSAFTWF MRSKFFDEGI HVVPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-19711281877Disease resistance protein RRS1
5w3x_D1e-19711281877Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.67711e-33boll| leaf| ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO310729541e-33
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384760.0KM438476.1 Gossypium aridum WRKY105 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636978.11e-159PREDICTED: probable WRKY transcription factor 65
TrEMBLA0A0A7EB931e-147A0A0A7EB93_GOSAI; WRKY105
STRINGGorai.008G138900.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153711117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-27WRKY DNA-binding protein 65