PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1116
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 319aa    MW: 36126.9 Da    PI: 6.435
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1116genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.72.7e-34157214259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers +dp++v++tYeg+H+h+
  Gh_A12G1116 157 EDGYRWRKYGQKAVKNSPFPRSYYRCTSTSCNVKKRVERSFTDPSIVVTTYEGQHTHP 214
                  8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381304.2E-1105319IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.804.4E-35141216IPR003657WRKY domain
SuperFamilySSF1182901.7E-29148216IPR003657WRKY domain
PROSITE profilePS5081131.973151216IPR003657WRKY domain
SMARTSM007741.1E-40156215IPR003657WRKY domain
PfamPF031067.9E-27157214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MHTFMERKEA LKMEDYVMGN SNSSFCDYTG NGFPLQSVFD SCSEDDNNNF SLGFMELLGV  60
QDFTCPSFDV AQQVPVSTKM ESPEQGFNLP ATPYSSSVSS ASSEAINDEP VKVEDDQEEE  120
DDQQKNKKQL KVKKTNQKRQ REPRFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY  180
RCTSTSCNVK KRVERSFTDP SIVVTTYEGQ HTHPSPLMPR PNLVGSTINS GISAGAAAAF  240
SVPMQRNTQS HYYYQQQQQQ QQHQHPFANS SSSLNFGHNG PSIDSSFLHE RRLCTSGQSL  300
LKDHGLLQDI IPSHMLKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-271492161077Probable WRKY transcription factor 4
2lex_A5e-271492161077Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.9590.0leaf| ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384750.0KM438475.1 Gossypium aridum WRKY104 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741792.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229006e-67WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1U8NS330.0A0A1U8NS33_GOSHI; WRKY transcription factor
STRINGGorai.008G137900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-53WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]