PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1040
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 490aa    MW: 54818.2 Da    PI: 5.1564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1040genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11309354454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  Av YI +L
  Gh_A12G1040 309 NHVEAERQRREKLNRRFYALRAAVPNV-----SRMDKASLLSDAVTYITEL 354
                  799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.4E-5626217IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000836.17E-13303359No hitNo description
PROSITE profilePS5088816.253305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16305368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16309369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-14311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSFSQE TPPSTLQQRL QFIVQSHQEW WTYAIFWQTS TDDHGRLFLA  60
WEDGHFQGTK DTSPKSTPNN NNNNNNNNMY SIQGLHNERR NVLKGLQALI GDNHDINGSL  120
VDGTDITDAE WFYVMSLTRS FSVGDGVLGK VLSTGSLVWL TGAHELQFND CERAREAQLH  180
GIGTLVCIPT NRGVLELGSS DMIKENWEFV QQVKSLFRFD PNLISGSTQF LERTISFPDI  240
GLLAGIEEEN GGPDNKTIED LKPGQQSSYV DSENSDSDGA LLAVNNTEKI RNPKKRGRKP  300
GLRRDTPVNH VEAERQRREK LNRRFYALRA AVPNVSRMDK ASLLSDAVTY ITELKSKIED  360
LESQLRKVCN EKVKVETIDA MDNQSTTTSE EQAAARPSNS SSAATARFSD LQLDVKVMGN  420
DDAIIRVQSE NVNYPGARLM SALRDLEFQV HHASMSCVNE LMLQDIVAKI PYGLTSEEAI  480
KSALLWRLHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-32252208195Transcription factor MYC3
4rqw_B2e-32252208195Transcription factor MYC3
4rs9_A2e-32252208195Transcription factor MYC3
4yz6_A2e-32252208195Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.260550.0stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5912585e-86JX591258.1 Gossypium hirsutum clone NBRI_GE26339 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636983.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1U8N8V80.0A0A1U8N8V8_GOSHI; transcription factor MYC2-like
STRINGGorai.008G128800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-77bHLH family protein