PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G0726

Common Name

HB4

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 281aa MW: 31221.2 Da PI: 8.009

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0726	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.9e-20	136	190	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LAk+l+Lt rqV vWFqNrRa+ k Gh_A12G0726 136 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTK 190 788899***********************************************98 PP
2	HD-ZIP_I/II	124.9	3.6e-40	136	225	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Gh_A12G0726 136 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 225 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.799	132	192	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.91E-19	134	200	IPR009057	Homeodomain-like
SMART	SM00389	2.1E-17	134	196	IPR001356	Homeobox domain
Pfam	PF00046	3.8E-17	136	190	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-18	136	190	IPR009057	Homeodomain-like
CDD	cd00086	5.45E-19	136	193	No hit	No description
PROSITE pattern	PS00027	0	167	190	IPR017970	Homeobox, conserved site
SMART	SM00340	4.0E-24	192	235	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.3E-10	192	226	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGLDDDACNT GLVLGLGFSS ALETPSKKPS CLKFEQPATT VAPPTTFEPS LTLGLFGDQG 60 YQVTKKSDVN KSGYLHHHEE PGAGDLYHRQ ASPHSAVSSF SSGRVKRERE VSSEELEVEK 120 NSSRVSDEDE EGVNARKKLR LTKEQSALLE ESFKQHSTLN PKQKQALAKQ LNLTPRQVEV 180 WFQNRRARTK LKQTEVDCEF LKKCCETLTD ENRRLQKELQ ELKALKLAAQ PFYMHMPAAT 240 LTMCPSCERI GGVADGNSKS PFSVASKPHF YNPYSNPSAA C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	192	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3060	0.0	ovule\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM134793	0.0	HM134793.1 Gossypium hirsutum homeodomain-leucine zipper protein HD4 (HB4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314305.1	0.0	homeobox-leucine zipper protein HAT22-like
Refseq	XP_016734784.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Refseq	XP_017634922.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-105	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2P5SN89	0.0	A0A2P5SN89_GOSBA; Uncharacterized protein
STRING	Gorai.008G086700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-85	HD-ZIP family protein

Publications ? help Back to Top
Qin YF, et al. Three cotton homeobox genes are preferentially expressed during early seedling development and in response to phytohormone signaling. Plant Cell Rep., 2010. 29(10): p. 1147-56 [PMID:20676891] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]