PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G0404 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 242aa MW: 27479.5 Da PI: 9.1119 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 69.5 | 5.7e-22 | 78 | 125 | 4 | 56 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +rYkeC++NhAas+G +a+DGCg f+ + + + CaACgCHR+FHR++ Gh_A12G0404 78 CRYKECRRNHAASIGRYAIDGCGGFICC-----KDDLFMCAACGCHRSFHRKD 125 89*************************8.....34689*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-10 | 68 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.9E-17 | 78 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-17 | 79 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.215 | 80 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-21 | 171 | 239 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.01E-13 | 171 | 239 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.28 | 176 | 240 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.1E-19 | 180 | 234 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MQFFPFKEQF HLPNHPTNTA LLIINSLSLS RSLSISLSLM EGETSNVVIK VEAESDVEPI 60 SVQRCCSLVS DQSNERICRY KECRRNHAAS IGRYAIDGCG GFICCKDDLF MCAACGCHRS 120 FHRKDYLPPP PQPKLMPSCL APWPLASHNG LTGETSLFVK DRNNTVAGPG AEEQNTNKEA 180 KRTRLTVEQK NKMMRFADKL GWRSQKHDDA EIRQFCEQVG ITKRMFVVWL NNNRRRSRKG 240 SK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-15 | 182 | 234 | 21 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX588026 | 1e-104 | JX588026.1 Gossypium hirsutum clone NBRI_GE22331 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435639.1 | 1e-167 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
TrEMBL | A0A0D2R974 | 1e-166 | A0A0D2R974_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G044700.1 | 1e-166 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18668 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-30 | homeobox protein 22 |