PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G0212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 434aa MW: 47161.8 Da PI: 10.3023 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.6 | 3.2e-14 | 347 | 394 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+k+ e + Gh_A12G0212 347 RRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKEINEELQKKQEII 394 79***************************************9987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.0E-14 | 343 | 413 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.588 | 345 | 396 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.90E-25 | 347 | 392 | No hit | No description |
Pfam | PF00170 | 1.3E-12 | 347 | 395 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.16E-11 | 347 | 399 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-14 | 347 | 397 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 350 | 365 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MGSHLNFKNF GDAPSMEGNE SKPLGNFPLT RQSSIYSLTF DELQNTFGGI GKDFGSMNMD 60 ELLKNISTAE ETQAFMTASV PGGEGSLSGG NLQRQGSLTL PRTLSQKTVD EVWRNLMKEN 120 DGAKDGSSGG GGGGANLPQR QRTLGEMTLE EFLVKAGVVR EDMQQFGVPN NTGFFGNNNS 180 GVALGFQQTN RNNGFLSNNN SVLSQPPRLP QNMTGTKSSQ PQQQQQQQQQ PPQQQQQQPQ 240 ARPLFPKQQT VAFAPSMHLM NTTQLASPGG RSSMVGIGDP SMNSNIVQSS GLQSGGMGIV 300 GIGSPGSQIS SDVISKNSVD TSSLSPVPYV FGRGRKCSAA LEKVVERRQR RMIKNRESAA 360 RSRARKQAYT LELEAEVAKL KEINEELQKK QEIINNTNFL VLCNAQFKQT LEAVNRAWGG 420 GKRQCLRRTL TGPW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.20244 | 0.0 | boll| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:11884679}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:16284313}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527484 | 1e-132 | HQ527484.1 Gossypium herbaceum clone NBRI_E_EYT27PB03G3LVN simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017637952.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
Swissprot | Q9M7Q3 | 1e-119 | AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
TrEMBL | A0A0B0N178 | 0.0 | A0A0B0N178_GOSAR; Abscisic acid-insensitive 5-like protein 4 | ||||
STRING | Gorai.008G024700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49720.1 | 3e-91 | abscisic acid responsive element-binding factor 1 |